RNA id: AMCG00013571


Basic Information

Item Value
RNA id AMCG00013571
length 2211
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00013571
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36620402 ~ 36646066 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGAGAGGATCTCTTCTTACGGAAACCTTTATGACACCAGTTCTCTCCTCCAGTATTGCAACGATGACAACTTGTCAGCAAGCAGCTCCATGGAGGTGGATGACCGGCTGTCCTACCTTGAGCAGCGGGTCCAGCTACAGGAGGATGAGATCCAGGTACTGAAAGCTGCCCTGGCAGATGTACTGAGACGCCTGGGCTGCTGTGAGGAGCAGGGCCAGCTGTTTGGCAAGAGACTGGCACCCACTAAAGTGCGTCAGCTTCTACAAGCCTTACCATCCAAGCCCCACTTCAGTAATGGGTACCTACCACAGAAAAGGCTGGGGGGCTACCCCTCCTCACCCTCCTCCCCCAAGAAGGAGCTGGTCCAGTCCATTAAGAACATGAGGAGAAGCAGCTCCACAGAGCGTCTGACCGCGGTGAGGAGGGAGGCATCGACCGACTCCAGGAGCAGGACCACATCTTCCAGCAGTTCATCCAGTGGGAAGAAAGACAGTAGAAAAACCTCGCCCTTACTGTATTTCATAGATGATGGCCACGTGAAGATGTTTCTGCGTGGACGCCCGGTCACCATGCATCTGCCTGACCAGTTTAAAGGTACCTACAACCTGGACAGCAAACTGGACCTGCCTGAGAACAAACTCAAGCTTCACTATGGCTACCGAGGCAGAGACTGTCGCTGCAATCTGTTCCTGCTGCCCACCGGGGAGATTGTCTACTTCATCGCCTCCGTGGTGGTCCTCTACAATGTGGAGGAGCAGCAGCAAAGACACTACCTGGGCCACAACGATGATGTCAAATGTTTGGCAGTCCATCCAGACATGGTTACTGTAGCAACAGGACAAGTTGCTGGAAACTCCAAAGATGGCAAGCTACTGCCCCCTCATGTGCGAGTGTGGGACTCGGTCAGTCTGAACACTCTGCATGTTATTGGGATGGGTGTGTTTGATCGCGCAGTCACCTGTGTTGCCTTCTCCAAATCTAATGGCGGGGCCCATCTGTGTGCTGTGGATGATGCCAATGACCACATCCTGTCAGTGTGGGACTGGCATAAAGAGAAGCAATTAGCTGACGTGAAGAAACACGAGAAGCCAAAGTATGTTCTGTGCGTTGCCTTTGCAGAGAATGGAGATGCTATCACTGGTGGGAATCGTATCAGTCAGGTTGTGGCAGGCGCTCACGAGGGAGGGATCTTCTCGTTGTGTGTTCTGAAGGATGGGACGCTGTATAACAATGCTGCTATATCATTGGTGCAGGTGCCTGAAATGTTTGGGCCGGTTCGCTGCCTGACCGAGGGGAAGGAGGAGAGCCTGTTTGTGGGAACCACCAGGAACGCCATTCTCGAAGGCTCAATCTCAGGGAATCTCCGTCCAATAGTGCAGGGACACACCGATGAGCTGTGGGGGCTGGATGCTCACCCCAGCCTGGAGCAGTTTATCTCCTGTGGGCAGGACAAGTTGGTCCACCTCTGGGACATCTTGTCCCACCAGCCTCTGTGGAGCAAGTACATTGAGGATCCTGCACGCTCAGCTGGTTTCCATCCCAGTGGATCAGTGGTTGCCATAGGAACAATGACAGCGAGGTGGCTGGTGCTGGACACTGAGACCAAAGACCTTGTGTCTATGCACACAGATGGCAATGAAATCATCTCCATTGTTAAATATTCTCCAGATGGAAAGTACCTCGCTGTAGGATCCCATGACAACTTCATTTATGTTTATGAAGTGACCGAGAATGGGAAGAAATACAGTCGTGTGGGCAAATGCACGGGCCATTCTAGTTATGTGACCCATCTGGATTGGTCTATGGACAGCAAGTTTATTGTCACCAACTCAGGGGACTATGAAATCTTGTTCTGGGATGCCTCAAGCTGCAAACATGTGACCAATATAGACACTGTACGCAACCTGGAGTGGGCAACCTCAACGTGTGTCCTGGGCTTCGCTGTGTTTGGCATTTGGCCAGACGGAGTGGACGGAACGGACATTAACGCTGTGTGCCGGTCGCATAACCAGAAGTTGCTGGCCTCTGCGGATGATTTTGGCAATGTAAACTTGTTCTCCAACCCCTGTTGCCAGCCACGGGCCCCAAGCTACGTCTATGGTGGCCACAGTAGCCATGTGACCAATGTTGCCTTTCTCCATGATGACAGTCACCTGATCTCCATTGGAGGGAAGGACATGAGCATCATACAGTGGACAATTGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56543 lncRNA upstream 6460 36613735 ~ 36613942 (+) True G45373
TU56511 lncRNA upstream 211667 36406043 ~ 36408735 (+) True G45343
TU56449 lncRNA upstream 432460 36160134 ~ 36187942 (+) True G45301
TU56419 lncRNA upstream 503071 36114055 ~ 36117331 (+) True G45276
TU56416 lncRNA upstream 554424 36064830 ~ 36065978 (+) False AMCG00013560
TU56565 lncRNA downstream 52732 36698798 ~ 36700063 (+) True G45395
TU56567 lncRNA downstream 58586 36704652 ~ 36704893 (+) True G45397
TU56573 lncRNA downstream 73586 36719652 ~ 36719989 (+) True G45403
TU56575 lncRNA downstream 81884 36727950 ~ 36729956 (+) True G45405
TU56578 lncRNA downstream 136503 36782569 ~ 36783620 (+) True G45408
AMCG00013567 mRNA upstream 144010 36462852 ~ 36476392 (+) True AMCG00013567
AMCG00013568 mRNA upstream 175672 36434886 ~ 36444730 (+) True AMCG00013568
AMCG00013564 mRNA upstream 217384 36380969 ~ 36403018 (+) True AMCG00013564
AMCG00013566 mRNA upstream 257251 36362945 ~ 36363151 (+) False AMCG00013566
AMCG00013559 mRNA upstream 488143 36119566 ~ 36132259 (+) True AMCG00013559
AMCG00013573 mRNA downstream 46086 36692152 ~ 36693141 (+) True AMCG00013573
AMCG00013570 mRNA downstream 63309 36709375 ~ 36712969 (+) True AMCG00013570
AMCG00013574 mRNA downstream 147975 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013576 mRNA downstream 160692 36806758 ~ 36810451 (+) True AMCG00013576
AMCG00013575 mRNA downstream 197462 36843528 ~ 36860797 (+) True AMCG00013575
TU56506 other upstream 216501 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 250315 36338262 ~ 36370087 (+) True AMCG00013566
TU56332 other upstream 960569 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 1282350 35334890 ~ 35338052 (+) True G45174
TU56162 other upstream 2505463 34114673 ~ 34114939 (+) True G45072
TU56576 other downstream 90611 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 228841 36874907 ~ 36877603 (+) True G45439
TU56708 other downstream 467436 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 669420 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 1408838 38054904 ~ 38058834 (+) False AMCG00013629

Expression Profile