RNA id: AMCG00013576



Basic Information


Item Value
RNA id AMCG00013576
length 1309
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00013576
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36806758 ~ 36810451 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTGACTGAAGGAGAAGCAGTCCATACCACAGCTACACAACCGCGCCAGGACTAAACGGACCATTGGTGAGGATTTATAAGcgatacaacaacaaaaacaaacaaacaacgaTTTGTCCATGGAAGTACCGAAATACCTTTGCAATTTATCCAACATGGAGAATTAATATCAGGAAAAAGGGAATGGACTTTGGCGGAACgcaaacatttattcatttatctaTGGTTATTTCAATCTGTTTCAAcgtatactttattttttattttttggaaacagTATAGCCttttattaatcaataatttCTTACCTGCTGAGATTTATACTTTTACGGGACTCTGAAAACTGAGTTTAATCTACACAGGAACTTCAACAATTAAATACCTTAATTCATCTGGAGGCAAActacttgattttttttgtttggtttttttttttacaaaaaggacatttttattgGGGATGTTGGGTTCAGTGAAAATGGAATCCCACGAAATTCCAGAATGGAATTCATTCTACAGCGAAGCCAATGATATGTACCCCTCAGCCAGCACAATGAACTCAGGTCTCGGATCCATGAACACCATCAACAGCTACATCAACCTGAACCCTGTGGGTTCCTCTGCTGCCATGAACATGGGCTACCCCAGTAGCGGGCTCAATGGTAGCCCTTTGGCAGGGATGGGCAGCGGGGCAAACCACATGAGTCTGTCCCCAAAGCGCTTCAAGATTGAGGACAAGGCCAACAAGAAGAACGCATCCAAGTCCCAGGAGGGAGGCAAAGGAGGCCACCAGGATGGCCTGCAAGAGGAGCACAGCCCCAACCCAGGCTCTGAAGGGGCTGAGTCAGCCCACTCTGACAGCTCCCACCATGGTTCCTCCTctgaggagcagcagcagcagcgaaaTCTACTTCAGCTCGACTGTCCCCCTCAGCCACCCGTTCAAGGCTCTCCATCCATATCTTCTGCCCCATCTGCCACCACTTCCAGCCACCCTCTCTCCCAGCCACTCGGGGGGAACCACCTACTACCCAGCTCCATCCAACACCTGGACCTGCAGAACGACCCCCTCAAGTCCATGGATCCCCACTACAACTTCAACCACCCTTTCTCCATCACTAACCTGATGTCCTCAGAGCAAAAGATGGACCTGAAGTCCTACCAGGATCAAGTGATGGCTTACAATAACTATGCAGTGTCCTCCCCCGTGGCCACCAAGCACAGTTACGAGAGCTCCACTTCTTCGGCTATTGACACAGGATCATATTACCAAACCCTATACAGCCGTTCAGTTCTCAATGCTTCGTAG

Function


GO: NA

KEGG:

id description
ko00340 Histidine metabolism

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU56578 lncRNA upstream 23138 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 76802 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 86769 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 101865 36704652 ~ 36704893 (+) True G45397
TU56565 lncRNA upstream 106695 36698798 ~ 36700063 (+) True G45395
TU56685 lncRNA downstream 253506 37063957 ~ 37064264 (+) True G45499
TU56746 lncRNA downstream 440750 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 999440 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 1007920 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 1065932 37876383 ~ 37932198 (+) True G45737
AMCG00013574 mRNA upstream 8782 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013570 mRNA upstream 93789 36709375 ~ 36712969 (+) True AMCG00013570
AMCG00013573 mRNA upstream 113617 36692152 ~ 36693141 (+) True AMCG00013573
AMCG00013571 mRNA upstream 160692 36620402 ~ 36646066 (+) True AMCG00013571
AMCG00013567 mRNA upstream 330366 36462852 ~ 36476392 (+) True AMCG00013567
AMCG00013575 mRNA downstream 33077 36843528 ~ 36860797 (+) True AMCG00013575
AMCG00013583 mRNA downstream 166821 36977272 ~ 37013396 (+) True AMCG00013583
AMCG00013582 mRNA downstream 208000 37018451 ~ 37034474 (+) True AMCG00013582
AMCG00013581 mRNA downstream 237482 37047933 ~ 37056776 (+) True AMCG00013581
AMCG00013584 mRNA downstream 261063 37071514 ~ 37074315 (+) True AMCG00013584
TU56576 other upstream 68279 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 168610 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 402857 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 436671 36338262 ~ 36370087 (+) True AMCG00013566
TU56332 other upstream 1146925 35655302 ~ 35659833 (+) True G45209
TU56611 other downstream 64456 36874907 ~ 36877603 (+) True G45439
TU56708 other downstream 303051 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 505035 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 1244453 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 1420115 38230566 ~ 38231330 (+) True G45850

Expression Profile


AMCG00013576 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

AMCG00013576 Expression in each Bioproject

Bar chart with 6 bars.
AMCG00013576 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.