RNA id: AMCG00013581


Basic Information

Item Value
RNA id AMCG00013581
length 2695
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00013581
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37047933 ~ 37056776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTGCCCTCTGTGATGCCGAGATGCCTGGTGATTCCCCAGTGAGGGGAGCACAGTATCCTGAGAACTACCTGAACCCTCTCCTTGGCTGTATACTGGATTTTAGTGATATTGACTGGGGAAATGATAAGGAACAACCAGTGGACCTTCTCGGACAGGATCCTTCTGATGCTCAGATCCATGGTGTGGACTGGCATGGGACATCTACCGAACCCATACATCCATCATGCCAACTACGCAATATATCCGAGATCAATGGAAACCACCTAGACTCACTTCCACAAGGGCTGGAGCACCAGGGAAACTTTATTTCTTGTACTACGTCTGTGGAGAAACGCATCCAGTTGGAGCAGAGGGGGAAACTGTGGAATGAGTTTATGAAGGCACACTCAGACTTCAATGACTGGTTGCGATTGGCTGAAAGCTTGGCAGCCTCCCCAAACTCTGCCCACGTCCTCTATGTCACTGCCAAAGAGGAGCTGAAGAAGTTTGAAGGCTTACAGAGAGAGGTGAGAGCTCGTCTTTACCCATTGGAGTCAATGACCCAGCAGTATCGGTGTCTGGCCAGGTTGTATGGTGGGGGATGGGGTGCAAGGCTGCGGACAATGGTTCAAGACAGCAGCCAACGCTTGGATCATGTCAGCAGGACAGTAGAAAATGTGTGCCGTAGACTCAAGTACTTTGTGAGCCAGCACGAGGAGTTTGAAAGCGAGCGGGAGAACATTGCCGTCTGGCTGGCAGAGATGGACATCCGGCTGACTGAAGTGGAACATTTCTACGGAAACAACACATCAGAAAAGATGAGGGAGCTCCAGACCTTCCAGGCGGCAGTGGGGGAGAATGCAGAGCGGCTGAACGGGCTGCTGGAGCGAGGGGAGCGCTTGATCCAGCGCAGCGAGCCTGGGGATGCTGAGGAGATTGAGCAGGAAATGCAGGAGTTGCTGCTGTACTGTGCCCGGGTATTCGAGGGGGTGGGGAGACTACACACACGCCTGCTCAGCATGAGACTGGTGTTTGAGGAGGACTGGCTCTCAGACCAACACGCGCTCTCAGATTGTGGCTCTGAGGGGCAGTGGGAGGACGAGGGGATTTATGATCGGAGCAGCACATCGGACCCTCAGCACTCCCTTTCCCTTCCTGCTGGGCTAGATGCCAACTCCAGCCTGGACTCACTGGCCCTCGAATGGGACCCCTCTGTGGATGTGGGGCGCTCCGGTTCTCACGATGATGCAGACTCCTCCTACTTCAGCGCCATCACTGGACTACATCATGTGGGCGATAGCTTGTCTAAAGATGCACGTACAAAGAGACAAAGTTTCCTGGATTCTTTTGGCTCGAGATCTGATATGACTGAAGCTGAGACTACAGATATGTACACCGAAAGTGACGTGCAATGTACAGGAACAAGACAGTCTGATGTGTCTGTCTTGGCTGAGAGTCTAGTGCTAGGTGTTGCTGAAGAAAGTCCTTGCCACACCTCCAGGAAGTATTTAACACCCGGAGGACACCTGTCTGAGCCTGTGACCTTTGACCCGGAACGTATCAGTGCCTGGCTGGGGCAAACGGAACCGTCTCGAAGATGCATGTCAAGCGTTCAAGAGGGGGTGGCCTGTGGCAATGCCATGGAGACTGAAGAGAATTTGAAGTTTCAGAAGAAGAGGATAAGGTCCCCTCCCTTGTCTGAAGTCAAGATCAATATTGAGAGAGAGTTTCAGGTTGCCTCTCCGAAGCGGGCGAGTTGTACTTCCCGGCTACTCAAAGCTGCCGTGTTTTTTCGCACGGTAAAAGCTGCAATCTTCATCCACCTCCTGCTGGCTCTTCTGCTGGTCCTAATCAGTCAGATCCCAGTCACTGCCAAAGAGCTCAGCTGCCACCATGCAAACAATTTTGCACGCTCTTTCCACATCATGCTGCACTACATCAACGGGCCCCCGCCCACTTAATCACCACTGCATCCAGCTGTGGATTGAACTGTTGCAATCTTACAAAACCGTGGTAATGTGCGTTAGATTTCACATTTcccatggaaaaaaaagagtatCTATTTTTGACTTTTAGAGGTTGAATGAGTAAATTGAGTCTCTGCACTTTAGCCTGTCATGTTTGATTGATAAATGTAAactttaaattaacaatttgtgatttgtgactTTTTGAATAGGGTCTGTCTGTGTAACAGACTTTTAGCATTAATGAAAGGTAAATATTTATCCATaaaatgtcattcattttcCTTAATCAAGGGACAAGAGTCCTTTTGTCATTGtacatttcaaactttttttttcaagggGAAATAGGTTCTCCCAGCACAAGGTGTTTCTTTTGTAGTTCTGGCTGCACAATGAAGTATAGATTTAGGATTCCTAAAGCCTTAACATGCACTTTTGTCTGAAGGACAAACCTGCATTGGTTTCTGCTCTTACCACAATTTGGAATAGTTTTTGATCATGAGTTATTTAAAAGCGGCACACTTGAAATGTATGACCCCCCCCCTTAGAACTTATCccattttgtactgtattgtttgtgaactgtaaatatatttttgtaaacctTCAGAGGGCATTTCAAGTGTGAttttgtacaataaataaaaattgatagAAAACTGAGTGAGAATGCATTGATCTTATTTGTAccaaatattgtaattaatgtaattaaatgttagGGTTGTTGCTTTCTTCAAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56578 lncRNA upstream 264313 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 317977 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 327944 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 343040 36704652 ~ 36704893 (+) True G45397
TU56565 lncRNA upstream 347870 36698798 ~ 36700063 (+) True G45395
TU56685 lncRNA downstream 7181 37063957 ~ 37064264 (+) True G45499
TU56746 lncRNA downstream 194425 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 753115 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 761595 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 819607 37876383 ~ 37932198 (+) True G45737
AMCG00013582 mRNA upstream 13459 37018451 ~ 37034474 (+) True AMCG00013582
AMCG00013583 mRNA upstream 34537 36977272 ~ 37013396 (+) True AMCG00013583
AMCG00013575 mRNA upstream 187136 36843528 ~ 36860797 (+) True AMCG00013575
AMCG00013576 mRNA upstream 237482 36806758 ~ 36810451 (+) True AMCG00013576
AMCG00013574 mRNA upstream 249957 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013584 mRNA downstream 14738 37071514 ~ 37074315 (+) True AMCG00013584
AMCG00013589 mRNA downstream 44910 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013587 mRNA downstream 54992 37111768 ~ 37122611 (+) True AMCG00013587
AMCG00013586 mRNA downstream 72242 37129018 ~ 37133189 (+) True AMCG00013586
AMCG00013588 mRNA downstream 97491 37154267 ~ 37170647 (+) True AMCG00013588
TU56611 other upstream 170330 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 309454 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 409785 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 644032 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 677846 36338262 ~ 36370087 (+) True AMCG00013566
TU56708 other downstream 56726 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 258710 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 998128 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 1173790 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1313880 38370656 ~ 38373198 (+) True G45894

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017129 False 852 lncRNA 0.53 5 NC_007126.7 29044225 ~ 29056376 (+)
grasscarp (Ctenopharyngodon idella) CI01000072_05315380_05336326.mRNA True 3087 mRNA 0.49 14 CI01000072 5315380 ~ 5336957 (+)