RNA id: AMCG00013582


Basic Information

Item Value
RNA id AMCG00013582
length 2335
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00013582
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37018451 ~ 37034474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAAGTGAGTGCGTACAAGTATACAGTATAAAGGATTGTGTATATGGGGTTTGTTTGGCTGTGTCATTAAGCCCATGTTGACTATATAGCATGCGAGAGATAGCTGGAGCACTAAACACCCTGTGCCAGTCCTCAGACCCATTTATGAGTCATCATGGGGGAATCCCAGCCTCATATCCTAAAGGAACTGGAGTTGAACATAGTGAGAGAGGCTCCTCCAACTGTTTACTATATTCCTGATTTCATAACAGAAAGAGAGGAGGCCTATCTTTTACAACAGGTATACAACGCCCCCAAACCCAAATGGACTCAACTCTCAGGCAGGAGGCTGCAGAACTGGGGTGGGCTGCCCCATCCTAAGGGCATGTTAGCAGAGTCACTCCCTAATTGGCTGCAGAAGTATGCGGAGAAGATCTCAGACCTCGGGGCATTTGCTGGAAAGACCGCCAATCACGTCCTGGTCAACGAATACAATCCAGGGGAGGGAATCATGcCCCATGAAGACGGCCCCCTGTATTTCCCCACTGTCACTACGATCAGCCTGGGGTCTCACACTCTGCTGGACTTCTACCACCCCATCAGTACAGGGCAAGACAATGAGGAAGTGCCCCAGACGGAGGAGAACCGATTCCTGCTATCCCTGCTGGTGGAGCCTCGCAGTCTGCTGATCTTACGGGACGACATGTACTTGCGCTTCCTCCATGGCATCCGCCCTGTGACTCAGGACACCGTCACGGACAAGGTGGCAAACCTGCATACCACCGGCGCCAAGGCCAGGGATAGTCTGAGCAGGGCCACCCGTGTCTCCCTCACCATCAGACACGTCCCCAAGGTCATCAAGACCGGCCTGCTGCTGGGGAGGAGGAAATAAGCCCCTGCACAGACACTTAGACTGCAGGATCTCCATCTTTTGTTTGGAAGGGAGAAGGCCCCACAGCAGTGTCCTTCAAATCCAGTCCTTATAGTTCAGTCCTCCAGAGTTATTAAGTCTTTTTGAATCGCTGCCAGCATTAGGCATAGGAAAATGGATAAAGTGGTTCGGTGATGTGAATATTTAGATCATTTTAACGATTGCAGCAGCTTTGATAGCTCTCTTTAAATCATCTCATTAGTCCGTTATATTAAATTGGCTAAGTGAATAATGCGTTTCTGATTGAGTTATCCATGAGCAtgagaagaaggaaaaacagaaggacCGGACTTGAAGCACACTCTCCTGTAGCATGGGGACCTTTGGAACATCAGGAGACTGTAGGACTCAGGAACTGGCAGCCTGTTCCCATTGCTCAGAATTGACCTGACCTGGCCTGGCCTTCACAGTCAGCGGTGCTCCTCCATCTAGTATTGGCTTCTGTCTTGAACACAAGATAGACACAGAGCTGAATGGATGGATCTGTATGTCACTCACATCTGTTTGTCAAACTTAATGCATCCTCTCAATTTGGGATTTAAGGTTCAGTGAGTGTGTTAGCTGCTGTCCCCTCCTGCCAGAGTGTTCCACGTTTAGCTGCCAAACTGGATGGCAGATATTACAGAAACTTACCATAATAAAAATGAGCAGCCCTGGCTTAAGAAACCAAACAGAGTAGACACTATCTGGTAGCTTGTTCATATAATATTGTCATGTatcagacacctttatccagggtgacttgtgatttttttttcttttcaaactgaCATACAATGTACtgcacatacaaaatatattgtacctCATGCAAGGCGAGGAGAGGCTAGGAAGGGTGGGCGGGGTGCATGTCAGTGCTCTGTACATTATCTTGACTTGTGCGAGTCTGTTCTGCTGGCAATAAAAGAAAAGGTCAGGCTGCTTCACACAGCAGAATTGATTTCTCTGCCCTTTAATCTTTTGGCTCATTCAGATATCAGCTTAATCTCGAGCAAACGCCAGGGAACCGATTCAGATGCAGGACAATCTTGAGTGTGTCAAGGGATGGGTGTTGCGGCTCTGCGTGTGTTCACTGTGTTAGGCTTCACTTCTTGAGACTCCGGTCCCTTGCTTCTCCAAAGACAGTTCATGCAATGCAGGTTGTACAGCACAAGACAACCCTTTATCCTACTTTGCACCTTCtcaatgcatatttatatttataacgGGGGGCAGAGCAATCTCTGCACAAGTAAGCCGTTAGCGGGACTTTTAATCCTCTGAATGGTTATTAATCCATTAAGACATAATCACTGAATTATATATTAACCCCTGTGCAGGCGAGACTTATGCTATGCTGTAGAGtggaaatgtattatcttgGATATTTGCATAAACAATAAATGCAACGGTTATTAGCAGAGAAATCTTTTGGACATTGACT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10768 ALKBH6; alkylated DNA repair protein alkB homolog 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56578 lncRNA upstream 234831 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 288495 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 298462 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 313558 36704652 ~ 36704893 (+) True G45397
TU56565 lncRNA upstream 318388 36698798 ~ 36700063 (+) True G45395
TU56685 lncRNA downstream 29483 37063957 ~ 37064264 (+) True G45499
TU56746 lncRNA downstream 216727 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 775417 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 783897 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 841909 37876383 ~ 37932198 (+) True G45737
AMCG00013583 mRNA upstream 5055 36977272 ~ 37013396 (+) True AMCG00013583
AMCG00013575 mRNA upstream 157654 36843528 ~ 36860797 (+) True AMCG00013575
AMCG00013576 mRNA upstream 208000 36806758 ~ 36810451 (+) True AMCG00013576
AMCG00013574 mRNA upstream 220475 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013570 mRNA upstream 305482 36709375 ~ 36712969 (+) True AMCG00013570
AMCG00013581 mRNA downstream 13459 37047933 ~ 37056776 (+) True AMCG00013581
AMCG00013584 mRNA downstream 37040 37071514 ~ 37074315 (+) True AMCG00013584
AMCG00013589 mRNA downstream 67212 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013587 mRNA downstream 77294 37111768 ~ 37122611 (+) True AMCG00013587
AMCG00013586 mRNA downstream 94544 37129018 ~ 37133189 (+) True AMCG00013586
TU56611 other upstream 140848 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 279972 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 380303 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 614550 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 648364 36338262 ~ 36370087 (+) True AMCG00013566
TU56708 other downstream 79028 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 281012 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 1020430 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 1196092 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1336182 38370656 ~ 38373198 (+) True G45894

Expression Profile