RNA id: AMCG00013586


Basic Information

Item Value
RNA id AMCG00013586
length 3031
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00013586
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37129018 ~ 37133189 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTCGTTCAACCACAATGCGGAGGCTCAGCATACGGGCATGCTGCGCTTCAAGAAGAGGAAATCCCGCTTCTCCTACCGGGAAATTCAGATACTGCTGGAGGAAGTACGCAAGAACCGAAACATTGTCATAGGCAAGTGCCTCTCTGCTTCCCTGTGCAAGTTCAATAGGGGCGTGTCGACAGAGGTGAAGAAGCGCACGTGGGCAGAAATCACGGCCCGCATCAATGAAGTCAGCCTGTGTCCCCGTGAGATCATCGAAGTCATCAAGAAGTGGTCGGACCTCAAATGTGACACAAAGCGGAAGGTGGCAGCCATGCGGGCCGGGGGGCtggggaggggcgggggggggcggTCGCGGCTCTCCAGGGACCTGACGCCGGTGGAGAGCGTGGTGCACCAGATCCTGCAGCTCGCCAGCATCCGTaacctgcccccccaccctgacGATGGCCCCTACCCGGACCTGGGCAACCGGATCGGGCAGCAGGACGGACGGGGCCCTGGGAGAGGAGTGGTGGACGTGgacgaggaggacgaggaggaggaagaggtggaggacgaggaggacgaAGACATGACAGGGATGCCCTCTTCATCTGTGTCCTGCTCCCCCATCAGCAGGCTAGAGGGCTGTGCCCCAAGCCTCCCTCTGTCCTCCCACGCTCTCCCAATCTCCATGTCTATGTCGGTGTCTCACAAGCAGGAGCTGGGGGATCCTACACCTGTATACTGCATTGCTCCCCACCAGGACGTGGAGTCGTTGGAGTCGGAAGAGGAACGCCGAGCCCATTTCCTCTCAGCTGCCACCACGGCCCGTCTCCAGCCTGCCGCCCCTCTGTCCCAGGTTGAGGAGGACTCCCTCCTGGGTGGGGGGCTTCGTAGGGGCGGAGGGGGCTCAACGGCCCCCACCAGCCCCCTGATGGCCTCTCGGAATTCCTTGAGCGTGCGAGAGAAGATGGTGCACAATGCCACGCTGAGCATCCGCGAGCAGCGCACCACCAACGAGCTGCTGGAGACGGTGTCACGCTCGCTAGAGCTGCTGTCCGAGTCCATGCAGCAGATGGTGGAGACCCAGCAAGACTTTGTGCGGGACTCGTTGCAGATGCAGAGGGAAACAGTCCAGGTGCTGCGCGAGTTCACCGCTGGGGCCCTGGCTCTCATGCACGACAAACTGAACGGCCACCCCCCTGCGCCAACCTAGAACTGTGGTCTGTCCTGGGCACGCTGTGACCGCGAGCACCGGAAGGCCACAAAGTGGACTGCATGACAGAGGTTGCAGAGAGGACAGAGGATTTGTGGTTGCGGCTGTAAGTCGAAGTTGCCACACTTCTCTTCCCAGCTTCTCTCCGCTACGTCTGAGTTCTAACCGGGGAGCCTTAGTTATGGACAAGGAGTTTTAATGGACTCTCCCCCCACCTCGTATGCGATTGGATTTTAGCCAAGCCGGAGCTTAGTTTTATTAAGCATATCAGGAACATGATATGAGCCCATGAGGAGGGCAGTTAATTTCCTCTTTTTACagtgaatgaaaaagaaatacaacaatgaaaaacaaaaacaaaccaaaagagTTCTTCCTGAACGATCTCCACTTCTTGTCCACCTAAACCATTGTCTGACTGCTGCCTGTACACAAATCCAGCTGTTACCTACAAATCCCGGTGCTCTTGGAAGAATtccaaacagtattttttttgtacaactTGGGCCTGTATTCATAAGGGTGTTGAGTGTGACCATTGTTAAGTGTGtggtggaaaacaaaaactactcAAAATGTCCAAACCTAATACTGGAGTACCACCAATTAGAGACCTTTATTCTGGTGAATCCAATATCTGTCTGACCTTGCAAGCTTTTGTGGAATTAATTAGTTTATAAAAGCAGTAGGTGACACTTCTccacttttttgtgtttgtgtttttcttgcttAGGAAAAACGGGTGTTAACCTAGTGCTACAGTAACcgttttatgaatatggctCACTATAGTTGTGCAGAAAGCTACACAAAATGCTTCTGGTGTGatgacaatatattttgtatagaaTTGCAACACGTTACTTTTAAGAGTTTCAATTAATGCAAACCACGTCCATAAATGTATGTACCTTGACGCTTGACAAATaacagtataatttaaataataacacaaatagtttattttgtggtCCGTACTGACCTTATTTTAGACAACAAGTCCCTAGCTTTAACCCAAAACAGCCATTTATAATCAGAGGAGGCTGTGTGGACAGGAACTGTGATAGGATTTAACTCACTGGGACACTCATAGAGGTGCtgtatgttgttattataaCCCCGAATTAATGCAATCCTGAAGGATTCACAGGGTGAATTGATTTTCACAACAGTTGTTTTAGTAATTGCCTAACGTGATTAATTTAAACTTGTTCCCACCTCTTTACAGAACAGTGCCCATCCAAGAAGTGTGGCTTGAAACATCtgctttaatgttttcaaaaaggGTGCttgttattactattgttactattattgtatatatattattgtccAAAGCTATGATCTCAGAGCACCTTTGCGgtgataacattttatttttctaccaaGAATAAAAACTTTCGGACCACAGCAGCGGAGGGCCGAAGTATTCCTGCCATAGACTAGAAACAGGGAATGTTACATTACGCCGCATGTAATATCCCacctattttcttttctttttggacCTTGCCTTAAATGTATCACTAATATGCTTCTATAGCATtaacaacattcacaaatttTGAGGAATTGGAAATCAGTTCGGTTACCTctttgattttatataattagatttatttatgtatttatttgtatttagtccGTTACATTAATGAACTAAAATCTCAGCGTACTACTACTTGCTCGGTTACCTCGCACAGTCTAGTGTAATAAGGGcagctgactttttttttaaatgaattttcCAAGGAACCACAAAACTGTTTATTGTCAGAACAACTTTGATTATTCATGGAgaatttcaactttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56685 lncRNA upstream 64754 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 345398 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 399062 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 409029 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 424125 36704652 ~ 36704893 (+) True G45397
TU56746 lncRNA downstream 118012 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 676702 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 685182 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 743194 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 940066 38073255 ~ 38073852 (+) True G45805
AMCG00013587 mRNA upstream 6407 37111768 ~ 37122611 (+) True AMCG00013587
AMCG00013589 mRNA upstream 23038 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013584 mRNA upstream 54703 37071514 ~ 37074315 (+) True AMCG00013584
AMCG00013581 mRNA upstream 72242 37047933 ~ 37056776 (+) True AMCG00013581
AMCG00013582 mRNA upstream 94544 37018451 ~ 37034474 (+) True AMCG00013582
AMCG00013588 mRNA downstream 21078 37154267 ~ 37170647 (+) True AMCG00013588
AMCG00013593 mRNA downstream 93467 37226656 ~ 37228647 (+) True AMCG00013593
AMCG00013595 mRNA downstream 182024 37315213 ~ 37327711 (+) True AMCG00013595
AMCG00013598 mRNA downstream 220093 37353282 ~ 37393858 (+) True AMCG00013598
AMCG00013600 mRNA downstream 273102 37406291 ~ 37411449 (+) True AMCG00013600
TU56708 other upstream 8447 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 251415 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 390539 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 490870 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 725117 36403354 ~ 36403901 (+) True G45338
TU56759 other downstream 182297 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 921715 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 1097377 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1237467 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 1431309 38564498 ~ 38564994 (+) False AMCG00013654

Expression Profile