RNA id: AMCG00013587



Basic Information


Item Value
RNA id AMCG00013587
length 921
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00013587
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37111768 ~ 37122611 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gggCCAAGACAGCTGCATGCTGAAGCTCTTGAGCTTCCCACAGCCTTCATCGTGTTGGGCTGGTTGGACAAGAAACAGACAGGCAAGATGGCTGCAGACACAGTGATGCAGACTGAGATGGAGGAGCTGCAGAGACGAGCCAATCAAATCACAGACGAGtCTCTTGAAAGCACTCGCCGCATGCAGCTACTGGTTGAAGAGAGCAAGGATGCTGGCATTCGAACTTTGGTCATGCTGGATGAACAAGGAGAACAACTGGATCGCATTGAGGAAGGCATGGATCAGATCAACCAAGACATGAAGGAAGCAGAGAAAAACCTCACTGACATGGCCAAATGCTgcggtctgtgtGTACACCTGGCCGCACATGGCTCCACAAACGCCAAGCCAGTGGGCACTTCCTGTCACCCGGGCCAGCcaatcagacagacagacaaacagacaaacaTCAGAGACCTCTATTGTGtatctccccccctcctccccactcCCCTTTGCCCTCCACCCTCCATCCCTCCTTGTCCAGAACAACTGGAACGCATTGAAGAAGGTTTGGATCAGATCAATCAGAACATGAAGGAAGCTGAGAAAAACCTCACTGATTTGGGCAAATGCTGTGGTCTGTGTTCCTGTGAGAAGCTGAAGAATATAGAAACCACTGGTGCGTACAAGAAGGTGTGGGGCAACAACCAGGACGGAGTGGTGTCCAGTCAGCCCTCCTCACGAGTGATGGATGAAAGGGAGAGGATGACCATGAGTGGTGGACATATCCGCAGGGTAACCAATGATGCCCGTGAGGATGAGATGGAGGAGAACTTACAGCAGGTGGGCAGCATCCTGGGCAACCTCCGCAGCATGGCGCTGGACATGGGCAACGAGATCGACATGCAAAACACGCAGATAGACCGGATCATGGACAAG

Function


GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56685 lncRNA upstream 47504 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 328148 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 381812 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 391779 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 406875 36704652 ~ 36704893 (+) True G45397
TU56746 lncRNA downstream 128590 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 687280 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 695760 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 753772 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 950644 38073255 ~ 38073852 (+) True G45805
AMCG00013589 mRNA upstream 5788 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013584 mRNA upstream 37453 37071514 ~ 37074315 (+) True AMCG00013584
AMCG00013581 mRNA upstream 54992 37047933 ~ 37056776 (+) True AMCG00013581
AMCG00013582 mRNA upstream 77294 37018451 ~ 37034474 (+) True AMCG00013582
AMCG00013583 mRNA upstream 98372 36977272 ~ 37013396 (+) True AMCG00013583
AMCG00013586 mRNA downstream 6407 37129018 ~ 37133189 (+) True AMCG00013586
AMCG00013588 mRNA downstream 31656 37154267 ~ 37170647 (+) True AMCG00013588
AMCG00013593 mRNA downstream 104045 37226656 ~ 37228647 (+) True AMCG00013593
AMCG00013595 mRNA downstream 192602 37315213 ~ 37327711 (+) True AMCG00013595
AMCG00013598 mRNA downstream 230671 37353282 ~ 37393858 (+) True AMCG00013598
TU56611 other upstream 234165 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 373289 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 473620 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 707867 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 741681 36338262 ~ 36370087 (+) True AMCG00013566
TU56759 other downstream 192875 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 932293 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 1107955 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1248045 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 1441887 38564498 ~ 38564994 (+) False AMCG00013654

Expression Profile