RNA id: TU56708


Basic Information

Item Value
RNA id TU56708
length 295
RNA type TUCP
GC content 0.49
exon number 5
gene id AMCG00013587
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37111768 ~ 37122611 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGAAGCTCTTGAGCTTCCCACAGCCTTCATCGTGTTGGGCAAGATGGCTGCAGACACAGTGATGCAGACTGAGATGGAGGAGCTGCAGAGACGAGCCAATCAAATCACAGACGAGtCTCTTGAAAGCACTCGCCGCATGCAGCTACTGGTTGAAGAGAGCAAGGATGCTGGCATTCGAACTTTGGTCATGCTGGATGAACAAGGAGAACAACTGGAACGCATTGAAGAAGGTTTGGATCAGATCAATCAGAACATGAAGGAAGCTGAGAAAAACCTCACTGATTTGGGCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56685 lncRNA upstream 49238 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 329882 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 383546 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 393513 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 408609 36704652 ~ 36704893 (+) True G45397
TU56746 lncRNA downstream 130630 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 689320 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 697800 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 755812 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 952684 38073255 ~ 38073852 (+) True G45805
AMCG00013589 mRNA upstream 7522 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013584 mRNA upstream 39187 37071514 ~ 37074315 (+) True AMCG00013584
AMCG00013581 mRNA upstream 56726 37047933 ~ 37056776 (+) True AMCG00013581
AMCG00013582 mRNA upstream 79028 37018451 ~ 37034474 (+) True AMCG00013582
AMCG00013583 mRNA upstream 100106 36977272 ~ 37013396 (+) True AMCG00013583
AMCG00013586 mRNA downstream 8447 37129018 ~ 37133189 (+) True AMCG00013586
AMCG00013588 mRNA downstream 33696 37154267 ~ 37170647 (+) True AMCG00013588
AMCG00013593 mRNA downstream 106085 37226656 ~ 37228647 (+) True AMCG00013593
AMCG00013595 mRNA downstream 194642 37315213 ~ 37327711 (+) True AMCG00013595
AMCG00013598 mRNA downstream 232711 37353282 ~ 37393858 (+) True AMCG00013598
TU56611 other upstream 235899 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 375023 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 475354 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 709601 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 743415 36338262 ~ 36370087 (+) True AMCG00013566
TU56759 other downstream 194915 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 934333 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 1109995 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1250085 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 1443927 38564498 ~ 38564994 (+) False AMCG00013654

Expression Profile