RNA id: AMCG00013593


Basic Information

Item Value
RNA id AMCG00013593
length 1992
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00013593
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37226656 ~ 37228647 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACACCATTAACTGCCAGGAGAAGAAGCTCTTGCAAATCCCCCGCTTGCCAGACACGGTGAAAAATCTCTTAGCCCAGCGCAACAACATCCAAGCTCTGCCCTCTGATGGTATGGAGGAACTCCGTTTGTTGGACCTGACTGAGAACAAGGTCAACCTCTCCGCTCACTCCACCCTGCCAGTCATGAGGAATCTTGGTCAGCTCTACTTAAGAAAAAACAGCCTGACTGCACTGCCTGCTGGTCTGCTGCAGAACCTCTCCAATCTGACTGATCTGGACATCAGTGACAACCGACTCACCTCCTTGCCTCCTGGGCTTCTCGTAGGTCTGCGAAGTTTGTCGATCCTCATCCTCAGCTTGAACCAGATCCAGATCCTGGAGAAAGGGGCCCTGGAGGGGACCCCAGCTCTTACTGTGCTACATCTGAGCAGCAATGCCCTTGAGGAGCTGGAAACTGAAGTCTTCTACAGCTCTAGGAACCTGAAGCAACTTGTCCTGTCCAACAATAATCTCAGGAGTTTAGGGAACGGCTCCCTCGCTGGTGCTACAAGCCTTAGGGTGCTGGATCTGAGCAGTAACAAATTGCAGGCTGTGCCCAAGGCTGCCCTCCGAGATATCCCTCAGCTCAGGAGGCTCTTGCTTCAAAAGAACCAGATCCCAAGCCTTTCTGATGACGATTTCTCTGGGCTAAGGGAGTTGCATTTGCTGGACCTAAGCAGCAACCGCATAAACTCCATCACAGATGATGCTTTGAGAGGTTTGACCCAGCTAAAGAAGCTGGATATAAGCTTCAACAGAATACAGTTTCTGCCTTCCATTATGTTCCAAGATTTAGGTAACCTTGAAGCCCTGTACCTCTACAACAATGAGCTGAGTAGCCTGCCTGCAAACAGCTTTCAGAGACTAGTTGTCTTAAAGGAGCTCCACCTTGACAGCAACCAGATCTCCCATCTACCCGTCGATGCCTTCCAAGGAGCTGCAAACCTCAGGGAGCTTCAGCTTGACAACAACAAACTCACATACCTTCCCCCACAGCTGTTCCATAACCTTACAGAGCTCAGGTCCCTCTCCCTTGACAACAATGCTTTGTCCAAGATCCCGGACACCCTTTTCCATAGCATCCATAGCCTCAGGGAGCTGCAACTGGAGCACAACTTCCTCGAGTCCATCCCTGCCTCGGCCTTCAGTGACCTGACCAGTCTGCGGACCCTTTCACTCCATCACAACCACCTCTCTGAGCTGTTCCCTACTTTGTTTGCCGACCTGAAGAAACTGAGGGAGCTGGAGCTCAATGAGAACCAAATTGAAAGGATCCCAGTTGGACTCTTCAAGGGGCTGAAAAGCCTGAAGAAGCTTCACCTGGACAGCAACCGGTTGGCATCCCTGTCCCCAGGAGACCTGACTGAATTGCTCAACCTCCAGGAGCTGCATATGAGCCACAACCACCTCTCTGTGCTCCCTCCTAACGTCTTCCGCAGCCAGAGCAGCCTCAGGAAGCTCCTGCTCCACAAGAACAAGCTGGTCTCACTACTCCCAGGTGTCTTCTCCTCCCTGGTGAATCTGAAGGACCTGGACTTAGAAAATAACCAGCTGCAACATCTGGCCCCTGAGATCTTCCAAGATCTCGGGCAGCTCCAGGTACTGTTTCTCAAGTATAACCGCCTGAAGCACCTCACCAACAGCACCCTGTCCTCGCTACGCTCTCTGAAGGAGATCTACCTGGATGGAAACCCCTGGGATTGCTCCTGCTCTTCCATCTTCTACCTCAGCCACTGGACTCACACTCACACCAAAATCCTGCAGGATGACCCTAAGTGCTCCACCCATGAGATGCCCCTGTCCAAAGCTGCCTTGCCACCACATGTTTTGTCCTCCCAGTGCTCGGGGGCCACGTCCTACAATGGCCTAAGAAGTGTTCTATTCCAAACCCTGGTAGCACTCTGTGCTATGTTTTGTGCCTTGCTTTTCTGTTCCCACAGTTGCTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56685 lncRNA upstream 162392 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 443036 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 496700 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 506667 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 521763 36704652 ~ 36704893 (+) True G45397
TU56746 lncRNA downstream 22554 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 581244 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 589724 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 647736 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 844608 38073255 ~ 38073852 (+) True G45805
AMCG00013588 mRNA upstream 56009 37154267 ~ 37170647 (+) True AMCG00013588
AMCG00013586 mRNA upstream 93467 37129018 ~ 37133189 (+) True AMCG00013586
AMCG00013587 mRNA upstream 104045 37111768 ~ 37122611 (+) True AMCG00013587
AMCG00013589 mRNA upstream 120676 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013584 mRNA upstream 152341 37071514 ~ 37074315 (+) True AMCG00013584
AMCG00013595 mRNA downstream 86566 37315213 ~ 37327711 (+) True AMCG00013595
AMCG00013598 mRNA downstream 124635 37353282 ~ 37393858 (+) True AMCG00013598
AMCG00013600 mRNA downstream 177644 37406291 ~ 37411449 (+) True AMCG00013600
AMCG00013601 mRNA downstream 183019 37411666 ~ 37486810 (+) True AMCG00013601
AMCG00013599 mRNA downstream 258541 37487188 ~ 37518978 (+) True AMCG00013599
TU56708 other upstream 106085 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 349053 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 488177 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 588508 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 822755 36403354 ~ 36403901 (+) True G45338
TU56759 other downstream 86839 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 826257 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 1001919 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1142009 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 1335851 38564498 ~ 38564994 (+) False AMCG00013654

Expression Profile