RNA id: AMCG00013595


Basic Information

Item Value
RNA id AMCG00013595
length 3297
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00013595
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37315213 ~ 37327711 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAGAGGCTATACCTGTCCAAGCAGGTGTTACAACTCAAACAGCTGATCCACAGATAGGCTCTATCATATTACATATAATAAGATATGTTGGGAATAGTCAATGGTGCAGAGGAACGTGTATTTGATGGTTCAATCAACACCAGGAGTTTCTAACATCATGCTGGGCGTGGGAGGGCATAGGAATAGGAATGAGGAACCTTTAGTGAAAATGCTAATGCATCTGACGTAATACAAGGAAGTGCTGCAAGACGAGACGAGCTCAGTCCGGTTCCCTTTGTTAAACCGAGAAACACACCTGTGTCGCGCATAAACAAGCGGCGGCGCACAGATAACCCCGCATCTGGCGCACACGGGCTCACTTTGCATCTGTTCCGCTCCGGCTGCAGCACCTGTGTTTCCTCCAGACAGTCTCGCTCGGAAGACATCATGGGACGGGATTATCACGGCGTCGTCCTCCTCCTCGGCTCCTTTCTGCTGCTGACGGGAGCCATTTGGGCGCAAGAGCTGACAACCGCTAACGACACGGCAGaGAATTGCCTCAGTGAGCCACATGTGGGTCCCTGCCGTGCTTCCATTACACGCTTCTACTACAACCCTACCAATCAGACCTGCATACCGTTCACCTATGGAGGCTGCGACGGTAACGGCAACAACTATGCCTCCCAGGAAGATTGCATCAATGCCTGCAATGGAGTCATAGaCCATGTCAAAACAGATGAGGCCCCAGGAGATGTGTCTGCCCTGCAGAGCTCCAGTCTTCCCAGGGGCATTGGTAAGACGATGCCAGCGGACCTGTACGCCGATATGTGTCACGCAGAGGTGAAGATGGGTCCCTGCCGGGCCTCAATGCCTCGTTACTTCTACAACCGCACCAGCCAAACATGCCAGCGTTTCATTTATGGGGGCTGCCGTGGCAACAAGAACAACTACCGGTCTGAGGCAGAGTGCCATTCCACGTCTACCGTCATCCCTGTCCCCAAAATCGATGTTACGTCTGAGTATAATGAGTACTGCATGGCAGAGCCTGAGACAGGGCTCTGTCGGGGGGCCTTCCCCAGTTTTTACTTCGACCCCAGGACCCAGAACTGCCTGCCCTTCATCTATGGAGGTTGCCAAGGAAACCAGAACCGCTACAGCTCTGTGGAGGAGTGCATGAGCCGTTGCCAGGGGAAGCAAGGCCACTTCGACGGGCACTTTGGCCACTGGAATCATCTGACCCCTGCATTTATCATGGCAACTGCTCTGGCTGTGATGTCGGGGATGCTGGTCATCGGCCTGATCCTCCTGACCTTCAAGAAGTACCGTCTCCGTATGAGCAGTGCGCACAGTGACCAAGATTTCCTGCTGCCCAAGGAGCAGTCTGCTGACAAGGCCTAATCCAGGAGCAccacaacccccctccccatcacATGGTTCTCTGTCGCCTTCAGTGTTCTCCCCTAGGCTCTAGAACACTCTAGAACAGGCCTCAGTCTGCAGGCCTACACTGCACTCCACTATCGTTCACGCTTCTCTACTCAAGGCCACTATATTAAACTGAGCTACATTAAAACACCCTCTACTACACTAGACGGAACTGCATTATTTTGCACTACTGTACTCTCTTCTATAACCTTTCCAGCAGCCtctcactttttttcttttatttgtctttcttaaTCACAGCACTCTCCTCTATTCTATTTTACCAAGACTTCCCTGTTTCTTCTAACGCTGTTTTTCCTGAATATATCTGTGGTGAGGACAGGGAGGCCAATATTTTGTGTTCCCCTTGGCATGGAGTAACCTCCCATTCCTTTGTCAATGGTTTTATTTCCTCATGTTAGACACTGGgctccatttaaaaatataatcataacaataatctGAGACGGGCTAAAATGGTCTACAAGGAATGTGTGCTATATAATCTGCCATTTTGTTCTTTCGGCATTGTTTCCTCTTACAATTTCCTAGATAGAAGCCAGTAAAAACGTCCTTTTCAAGCTCAAGTCCCATGAAACGCTAGTCAGTTATGGGCCTTTTATACTACTGACACCGACAACTCCAAAAGATAAGgcacaaaaatattttgcagatgTGCTGGATTTTTTAAGGAATTTatcaaataaagtatttttatgtatattgttttaaatttggtaAGCAAATCAAGGAATACAATTGCTAGGGATTGTGCGAGTAGAGAGAGATCCAGGTGCTCGgtggaataaacaaatcacagcAGTTCAAAAGCTACTGTCATTTTACCACCTGAGGCTCCTTTTAATTGGGCAGGCAAAGTATGTTAAAGCAGAAGATGGAGGTGCAAATTTCTAAATATAAGTGGTACAATACCTAGATCTCCCACAAGTACCTTCTCCCCAGTAAATTTAACATAGAATTGCCATACTTGAGTTATTTGAAAGTTCCCAGGGTTTCCTGCTCCTCATTTTTATGAGGAGAACTTCAAAAAAGGCTCTGTGCTGTGAGTTGAAATGCAAACCAGAAGACCACCCTATGGCCTCTCAGGACTGGAATTTGGCAGCCCCTGATATTGTGAGATAACCTTATCACATTGCACCTCCTATCTCCCCTGCAATATTGTTGAATGAGGCTCACACAGAGGACGAGACATGTGGACTGCATTTACTTCACGTTTGAAAATGAAACCGTAGTGTAGACCGAAAATGAATCCATATACTGCAGGATGTCATTAACCGCATTCATCTCATATTCACCTCTATCTAGTGGTGGCGGGTATTCTAGAGGATTGAGTTTTTAAGACTTTAGTTCTATATTTGATACTGAAGAtgtatgtgctttttaaagtgTAACTTAAGGTTCTGCAATTTGGATgaagtttgaatgtttaatgtGAGCTAAGCTTTACTTGATTCCACACAGGAGTCATTTTTGTGACCTAGCTTTGGTGGTTAAAGTGGAATACTGACACTGTGTTTTGGAATATGTTGTTTAGAGGACCTagcagaaaatcagaaaagctGTTGTGAACGTTAATGGAAAACTGCTTGAAGTGATTTTTGTTGTGCAACGAATGTTGATAAAGTGATGGCCGTACAGAGTTGATTTTCTCTATTGGAGCTTTAAAAGTAAGGTCACTTTAATCATGGTCTCCACTActgtttgatctgtaattcaAATAAACTTCAAATTTTAAGGAAAATGTTTAACATTGGTAAATCCTTTTCTGAGGTTTCTATTTCTTCAGTGTATGTACTGTAGTTCTGCCAACATTGGATTCATTAAAAAGGTTAGATGCATTGtgtgcaatattaaaataaccccCCTATCC

Function

GO: NA

KEGG:

id description
K23421 SPINT2; Kunitz-type protease inhibitor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56746 lncRNA upstream 24448 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 250949 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 531593 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 585257 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 595224 36719652 ~ 36719989 (+) True G45403
TU56957 lncRNA downstream 482180 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 490660 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 548672 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 745544 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 770279 38097990 ~ 38098531 (+) True G45812
AMCG00013593 mRNA upstream 86566 37226656 ~ 37228647 (+) True AMCG00013593
AMCG00013588 mRNA upstream 144566 37154267 ~ 37170647 (+) True AMCG00013588
AMCG00013586 mRNA upstream 182024 37129018 ~ 37133189 (+) True AMCG00013586
AMCG00013587 mRNA upstream 192602 37111768 ~ 37122611 (+) True AMCG00013587
AMCG00013589 mRNA upstream 209233 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013598 mRNA downstream 25571 37353282 ~ 37393858 (+) True AMCG00013598
AMCG00013600 mRNA downstream 78580 37406291 ~ 37411449 (+) True AMCG00013600
AMCG00013601 mRNA downstream 83955 37411666 ~ 37486810 (+) True AMCG00013601
AMCG00013599 mRNA downstream 159477 37487188 ~ 37518978 (+) True AMCG00013599
AMCG00013602 mRNA downstream 246639 37574350 ~ 37581432 (+) True AMCG00013602
TU56708 other upstream 194642 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 437610 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 576734 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 677065 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 911312 36403354 ~ 36403901 (+) True G45338
TU57084 other downstream 727193 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 902855 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1042945 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 1236787 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 1491698 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile