RNA id: TU56759



Basic Information


Item Value
RNA id TU56759
length 889
RNA type TUCP
GC content 0.46
exon number 3
gene id AMCG00013595
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37315213 ~ 37327711 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTTTGTTAAACCGAGAAACACACCTGTGTCGCGCATAAACAAGCGGCGGCGCACAGATAACCCCGCATCTGGCGCACACGGGCTCACTTTGCATCTGTTCCGCTCCGGCTGCAGCACCTGTGTTTCCTCCAGACAGTCTCGCTCGGAAGACATCATGGGACGGGATTATCACGGCGTCGTCCTCCTCCTCGGCTCCTTTCTGCTGCTGACGGGAGCCATTTGGGCGCAAGAGCTGACAACCGCTAACGACACGGCAGaGAATTGCCTCAGTGAGCCACATGTGGGTCCCTGCCGTGCTTCCATTACACGCTTCTACTACAACCCTACCAATCAGACCTGCATACCGTTCACCTATGGAGGCTGCGACGGTAACGGCAACAACTATGCCTCCCAGGAAGATTGCATCAATGCCTGCAATGGAGTCATAGGTTAAGATTCGAATAGATACCCAGCAGCCTGTATCAACTCAGTTATGATCAGATCCGGGAGCTGTCTTGGTATTTTTCCAGCTAAGAAATAAAAGGCTTCACCAATTCTGGAAATAAACTGCCTCTCCTTTTATTCAATAAACTTATTACCCTCATTTTAAGACCAATGACCATTTGTTACTGTACAAAAGCAGAAATACTGCACGGTTGAATTTAAGTTGTGAATTTCAaccttttgatttctttttgttaattttagtCGAGGCCATTTTATTCCAAGTTAGTTGGAGTTGTTGTCTGACATGGCTTTTGAATGCTGACTCCATTTATAGTGTAATAAGTCTGAGTGAATGGCAAGACATGTTTATGTAGCACACGgatgtcattattatttgtacctGATTGTACCTTTTCACCTGTTTGTGAAGAGAGGCAAATAAACCCAGAAAATTCACCATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56746 lncRNA upstream 24721 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 251222 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 531866 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 585530 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 595497 36719652 ~ 36719989 (+) True G45403
TU56957 lncRNA downstream 489560 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 498040 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 556052 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 752924 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 777659 38097990 ~ 38098531 (+) True G45812
AMCG00013593 mRNA upstream 86839 37226656 ~ 37228647 (+) True AMCG00013593
AMCG00013588 mRNA upstream 144839 37154267 ~ 37170647 (+) True AMCG00013588
AMCG00013586 mRNA upstream 182297 37129018 ~ 37133189 (+) True AMCG00013586
AMCG00013587 mRNA upstream 192875 37111768 ~ 37122611 (+) True AMCG00013587
AMCG00013589 mRNA upstream 209506 37101686 ~ 37105980 (+) True AMCG00013589
AMCG00013598 mRNA downstream 32951 37353282 ~ 37393858 (+) True AMCG00013598
AMCG00013600 mRNA downstream 85960 37406291 ~ 37411449 (+) True AMCG00013600
AMCG00013601 mRNA downstream 91335 37411666 ~ 37486810 (+) True AMCG00013601
AMCG00013599 mRNA downstream 166857 37487188 ~ 37518978 (+) True AMCG00013599
AMCG00013602 mRNA downstream 254019 37574350 ~ 37581432 (+) True AMCG00013602
TU56708 other upstream 194915 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 437883 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 577007 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 677338 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 911585 36403354 ~ 36403901 (+) True G45338
TU57084 other downstream 734573 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 910235 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 1050325 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 1244167 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 1499078 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile