RNA id: AMCG00013599


Basic Information

Item Value
RNA id AMCG00013599
length 1561
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00013599
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37487188 ~ 37518978 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCGGGGAAGAGGCAGAAGAGACAACGACCTGATTGGTCAGACAGTCCGCATATCACAGGGACCTTACAAGGGGTACATTGGGGTGGTCAAAGATGCCACGGAATCCACTGCCCGTGTGGAGCTACATTCCACCTGCCAGACTATCTCTGTGGACCGTCAGAGACTCACCACTGTGGGTGCAAGGAGACATGGAGGAATGACCTCAACTCATGGACGCACACCCATGTACGGCTCCCAGACTCCCATGTATGGGACTGGCTCCAGGACCCCGATGTACGGCTCTCAGACACCACTCCACGATGCTGGAAACCGTACCCCTCACTATGGTTCTCAGACCCCGCTGCATGATGGGAGTAGGACGCCAGGGCAAAGTGGAGCCTGGGACCCCAACAACCCCAACACCCCCTCAAGGGCGGACGAGGAGTACGAGTTTGGCTACGATGACGAGCCCTCCCCATCTCCGCAAGGTTACGGAGGCACCCCCAACCCACAGACCCCTGGCTACCCAGAAGTGCCCTCTCCGCAGGTCAACCCCCAGTACAACCCCCAGACACCAGGCACACCAGCCATGTACAACACAGACCAGTACTCTCCCTATGCGGCCCCATCTCCTCAAGGCTCCTACCAGCCCAGCCCAAGCCCCCAGAGCTATCATCAAGTCGCTCCCAGTCCAGTGGGCTACCAAAACACCCACTCCCCAGCCAGCTACCATCCCACGCCCTCACCCATGGCCTACCAGGCCAGTCCGAGCCCCAGCCCGGTAGGCTACAGCCCGATGACCCCGGGAGcaccctctcctggagggtacAACCCCCACACCCCCGGCTCCAGCATCGATCAGAGCTCCTGCGACTGGGTCACCACTGACATCCTGGTGCGTGTCAGGGACACCTTCCTGGACAGCCAGGTGGTCAACCAGACTGGGGTGATCCGCAGCGTCACGGGTGGAATGTGTTCGGTCTTCCTCCAAGACACGGAAAAAGTGGTCAGCATCTCCAGTGAACATCTGGAGCCAGTAACACCCACCAAGAATAACAAGGTGAAAGTGATCCTGGGAGAAGATCGGGAGGCCACGGGTGTCCTGCTGAGTATAGATGGGGAGGACGGTATTGTAAGAATGGAGCTGGACGAGCAGCTCAAAATCCTCAATCTTCGCTTCCTGGGCAAGCTAGAAGTGTGACCCGCTCTGTGTGACCCCACAGACAACTCACTCAGAAGTAACTAAATAAGGAAGAAATATTAAGAACATACTTTTCAGtgtgttagttttttgtttgtttgtttatttacccCTTCAGTTCCCTAACTCTAGAAAAGTGATCTGTAAGACTTTACAAAGGCGAAACaataaaaggaaaggaaaaaattaTGTATGGAGGACTTCATTCcaagttgttttttctcctttttttcctgGGGGGGGTGCAGGGACAGACACTTGCTGGAACCAAGTTGTGGGGTAGTAGCCTCCTGCTCTTGAATTGTGTAGTGTcactgattgttttgttttggccaTTAAAAAAAGTTCCACAACTCAATAAAGCCTGTCAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56746 lncRNA upstream 196423 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 422924 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 703568 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 757232 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 767199 36719652 ~ 36719989 (+) True G45403
TU56957 lncRNA downstream 290913 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 299393 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 357405 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 554277 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 579012 38097990 ~ 38098531 (+) True G45812
AMCG00013601 mRNA upstream 378 37411666 ~ 37486810 (+) True AMCG00013601
AMCG00013600 mRNA upstream 75739 37406291 ~ 37411449 (+) True AMCG00013600
AMCG00013598 mRNA upstream 93330 37353282 ~ 37393858 (+) True AMCG00013598
AMCG00013595 mRNA upstream 159477 37315213 ~ 37327711 (+) True AMCG00013595
AMCG00013593 mRNA upstream 258541 37226656 ~ 37228647 (+) True AMCG00013593
AMCG00013602 mRNA downstream 55372 37574350 ~ 37581432 (+) True AMCG00013602
AMCG00013604 mRNA downstream 76094 37595072 ~ 37602985 (+) True AMCG00013604
AMCG00013605 mRNA downstream 141419 37660397 ~ 37666944 (+) True AMCG00013605
AMCG00013606 mRNA downstream 152128 37671106 ~ 37675959 (+) True AMCG00013606
AMCG00013603 mRNA downstream 157730 37676708 ~ 37683789 (+) True AMCG00013603
TU56759 other upstream 166857 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 366617 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 609585 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 748709 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 849040 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 535926 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 711588 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 851678 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 1045520 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 1300431 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile