RNA id: AMCG00013603


Basic Information

Item Value
RNA id AMCG00013603
length 2086
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00013603
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37676708 ~ 37683789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtctctctgtccctctgtatctctgtctgtctgtctgtctgtgtagcAAGATGCTCGATTCAGAAGGCACGCTGGACCACAGGCGCCTGCCACGTATGGCTGCCTCTCTGAACCTCGGGATCTCTGTCAAGGAGCCCCCCACAGACACATCCGAGACACCGCTGTCCCTGCCACCCCTTGCTCCCGCCCTTTCCCCCATCACTGTGCCTGACTACGAGCTTGTATGCCAAACGCCCCCCTACCCCGACACCCCAGACCTGTCTCCCGACCCCAGTGTTGCTCCGGCTTGGGGGTCCTCAGGTTCTGACATCCCATACCGAAAGGGGGTGGAAGAGAGCGCAGAGGAGATAggtgagggagaggaagaagacAAAGAGGGGGAGgagcagaagaagaagcaggaagaggaagaggggcaGGATGCCCATGTGAGGGGGGGAGACCCAGGGGATGGCAAACCCTCTTCAGTGACAGTGGAGAACAGCCCCAAGAAAAAAAGGACCTGTGTCGATGCAGAGTACAATATCTGCCACCTGATGCGTTCGGCGACCGTGTGCAGCGAGTTGTTCGACCGGCTGCTGCAGGACTGCCCCCAGTTCCACGACTGCAAGAGCTGCCTGGCTGCcttcctgctggagaaagAAGTTGTGGACACCGCTGGGCTGGCTTTTGAGAGGTACCAGGTGGTGGCCTTTGGCACAGGGGAGTCCTGCTGCTCGGGATGGCTGGGCTTCACAGGGCGCATTGTTCACGACTGCCACGCCCTTGTTCTACTGTTCTACAGCGAAGATCAGGAGAAGTCCATTTACAAGAGGTCCCCGGACAGTGAGCTCCTGCAGCTGAAGCCAGGCATCTATCTGCACCTGTACACCAACCAGACTCCCAAAGGGGCGGCCCAGTGCATTCTCATgAGGATGTCCAGCAACAATTACACCTCCCTGAAGCTGCAGTGCCACACCAAGGGCTCCCTCATCCCCGCCTCCTTCCAGCCGCCCAGTGTGTGGGCCTCGCGCATCTGCTGCATGTCTGACAGCGACAAGCTGACCCGGTGGGCCGTGCTGGGGGTGCAGGGGGCGCTGCTCAGCTATTTCATCAACCCCCTCTACATCGTCAGCGTCGTGCTGGGAGATTACAGCCACAGTGTAGAAAAAGTGTCAGACGTGATAAACGAGCGTCTAGGGCAGGGCTGGCATAGTCAGCTGCCCCCCCCCTTTGAGAAGCGGGAGATGTACATTTTCGGTGGGGCCAACGTTGGCCCGTTAGCCAGCCCACCTGAGTACAAGGACCTAAGCCTCAACTGGTGCCTGGGAGATGTGGGTGTGGAGATCATTGACAGCACCACTGGCCGCGCCATTGAAGAgtctCCCTTCACCAGCGGCCCGTGCCTGTCCAGCCGGTTGTGTAAGGCAGCTTTCCTCAGTGCATTCAGGGCCGTGAAGGCCAAGCTCTACCAGGAGGCGAAGGCAGTGGTCAGGGCACAGTTTGTGAGCAACAACGTGGGGACCTGGAACTCCAAGAACATCGTGGACAGCTTCAGTGACTGATCTGCTCTGCCAGGCAAGACTCATTTAGGGaatgttctgtttcttttaattcattttttgctGCATTACTGTTGTACTGAAACTTGTCAGTTGGTTTTTAAGTTAACAACCGTTGGCGTGTGGGCCTGGTGTGAATTTATTATGGtatgctttattaaatatagaAGGAGTAAAACACCATTAAATTATAGTGTTTACATTGCAATGCAGAATAATAGTAGTTGATTTATGCTGCAGGCTTCACAATCTCCTTACATTGCCTTGGCTCCTAGTTTTCTATGTAGTGTATGCTGTGAGGctagatttaatttgtgactcAGTTAATGCAGATTTCTTATGATCATTttgacaattttattttgttgcatttcagcataaatgttttaattgaaggGATTATTAACCATAGAAATGGCCTGTTACAAATCtttggaaaattgaaaatatttggcatgtttatttcttctatatattacagatttctatatagatttttttctctgtgtatatagttatatattcaATGTAAAATGATACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56746 lncRNA upstream 385943 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 612444 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 893088 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 946752 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 956719 36719652 ~ 36719989 (+) True G45403
TU56957 lncRNA downstream 126102 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 134582 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 192594 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 389466 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 414201 38097990 ~ 38098531 (+) True G45812
AMCG00013606 mRNA upstream 749 37671106 ~ 37675959 (+) True AMCG00013606
AMCG00013605 mRNA upstream 9764 37660397 ~ 37666944 (+) True AMCG00013605
AMCG00013604 mRNA upstream 73723 37595072 ~ 37602985 (+) True AMCG00013604
AMCG00013602 mRNA upstream 95276 37574350 ~ 37581432 (+) True AMCG00013602
AMCG00013599 mRNA upstream 157730 37487188 ~ 37518978 (+) True AMCG00013599
AMCG00013612 mRNA downstream 29959 37713748 ~ 37714896 (+) True AMCG00013612
AMCG00013609 mRNA downstream 82202 37765991 ~ 37777845 (+) True AMCG00013609
AMCG00013616 mRNA downstream 121418 37805207 ~ 37817764 (+) False AMCG00013616
AMCG00013618 mRNA downstream 134791 37818580 ~ 37818846 (+) False AMCG00013618
AMCG00013614 mRNA downstream 161644 37845433 ~ 37852929 (+) True AMCG00013614
TU56759 other upstream 356377 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 556137 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 799105 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 938229 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 1038560 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 371115 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 546777 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 686867 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 880709 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 1135620 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile