RNA id: AMCG00013604


Basic Information

Item Value
RNA id AMCG00013604
length 3590
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00013604
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37595072 ~ 37602985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAACGTCCAACAACCTGCAGCAAGGGAGCGTAGGGAGATAAGTGTCCCGTAACATATTTGAATTTAGGGATTTGCTTTTTGGGaagtttttttcccttccttttttccttttccttttcttcctttgGTATTGGGGATACACGAACATACCTGGACACTTACTGGATATCAATTATCTGTCTGCTCTTGATAGCGGACCAAGAAGACGCAACATGGCTTTACCtctgttagtttgttttttggccTTGATATCAACGCATTTGGTACAGTCTTCCGGTATGTTTGAGTTGAAGGTGCACTCCTTCAGCACTGCCCGCAGCATTTGTCGCAAATCAAGAGACTGCCAGATCTTTTTCCGAGTCTGTCTCAAACATTCCCAGGACATCATCTCTCCCGAACCACCGTGCACCTATGGCACCGGAGTCACGGATATATTTCGCTCTGATCAAGGAGCCATCTCCAGAAGCGCTCCCATTCGCGTACCTTTCCATTTTAAGTGGCCGGGAACGTTTTCACTCATTATCGAAGCCTGGAACGCAGAATCCTCCGAACAATCCACAGATAACCCTGTGAACCTGATCAGTCGTTTGGCGATGCGCAGAAGACTGGCCGTGGGAGAGGACTGGTCGCAGGACGTGCACAACTCCGGGGAACAGCAGAGCGACATTCGCTACTCCTACCACGTCGTGTGCGATGAGCATTACTACGGGGACAGCTGCTCAGACTACTGCCGGCCAAGGAACGACACCTTCGGGCACTTCACCTGCGATGACGCCGGCAACCGAGCCTGTCTGTCTGGCTGGAGTGGAGAGTACTGCTCTGAACCCATCTGCCTGTCTGGCTGCAGCGACAAGCATGGCTACTGCGAGTTCCCTGGCGAGTGCAAGTGCCGCCTGGGGTGGCAGGGACGCCTGTGCGACGAGTGTGTGCGCTACCCCGGATGTTTGCATGGGACCTGCGGCCAGCCCTGGCAGTGCAACTGTCAGGAGGGATGGGGCGGCCTATTCTGCAACCAGGACCTCAATTACTGCACCAACCACCGGCCCTGCCTCAACGATGCCACCTGCACCAACACGGGTCAGGGGAGTTACACCTGCACCTGCCGCCCGGGCTTCAGCGGCACCAAGTGTGAGATTGAGACCAACGAATGTGCCAGTAACCCATGCAAGAATGGAGGCAGCTGCAAtGACCTGGAGAATGATTACTCTTGCACCTGCCCTCAAGGATTCTACGGCAAAAACTGCGAAATCAGTGCCATGACATGTGCCGATGGGCCCTGCTTTAACGGGGGCACCTGCGTGGAGAAGAGTGGCTACTGCTTGGATGTGGGCAACAGCAAACTGTGCCGCTGCCGGCCGGGCTTCACGGGCCTCAACTGCGAGATCAATGTGGATGACTGTGCCCGCAACCCCTGCCGCAACGGGGGGACCTGTGTGGACGGCGCCAACGACTACACCTGCACCTGCACCCTGGGCTACACAGGCAAGGATTGCAGCATCCGTTCAGACGCCTGCAGTGCCTTCCCCTGCCAGAATGGCGGCACCTGCTATACCCACTTCACAGGCCCTGTGTGCCAGTGCCCCTCGGGGTACATGGGCTCTCGCTGCGAGTTCAGCCTCACGCCCACCGTCTCTACAAATCCGCCGATCAAGCCGATCCCTGTGGCCCTGGCCATCTCCTTCGCCCTGGGCCTGGTTACCCTTCTGCTGGTAGTCTGCGCCACCGTCATTGTGCTGCGGCAGATGAGGCAGAGCAAGAAGGGGTTGGGCAAAGCCGTGCGCAATGACCTGGAGCCCATCAACAACCTCTCACACTACCCCCGGGAGAAGGAGGCCTTTCTCATTCCCGGAGGGCACTACAAGGTCACCAACAAGGACGTTGAGTTCAACGGTGACAGCATCGGGGACAAGGCTGGGTACAAACAGAAACTCATGGACTACAACCTGGCTGAGGATGAGGCGCCGCTCACCAAAAAGAAGTTCGACCTaaaaaaatCCGAACACATCATCTCTGTTCCTCCACTGAGCTTCCCAAAAGATGGCCTTTATCACCCAGTGTACATCATTCCAGAGCAGATGGAGCAGTGCGTCTTTGCTACTGAGGTTTAACAACAGTATTCCGGACTGTGGTGCAGCTCCCTCCCTCCTGGCAGATTGcctgtaaatgtttacattaatgacagacattttgaaagaatTTAAGAGAAtatattatatctatatctatttaatatttattcacgCTGCTCATTTTGAAAAACTTACTACTCGGACAAAGTTTggaaagaagaataaaaagaaaagcgttaaaggaaaaaaaaaacttggattGACACCGGCCTGGGAAGGAATGGACAAAAAGaatgacagaaagaaagaaaaaagagggAAGGAGGCAGAGAAGTCGAAAGTGAGTCGGAAATTATTTGCACTACATTTTTCCCCATTCTTTTtccgttttttttaaatatacacctaaaaaggaaaacattcctCAAATGATGCAGAGAACCAAGGATCTTtatcaaatatttgaaaaggcCGGACCTTTTTCTTGCGAATGccatgaaacacaaacagaaaacaaaaaaaaacctaaaatataAGAGAAAAAGGATTCCTCTCCATGAAAATCCGAAAAGGagccttaaaaacaaaaatcatacctacataaataagaaaaagctgcaaaacagaaaaaacacattttgattttgtgtcCAGGTTTTTGTGCAGTTTTTCAATAGGCTCGTGCTTTCACAGAAACATTCCAAAGGAAGGCAGAACATTTTTACGATGGGCTACCAATTCATTTTAGacctaaaaaaggaaaaaaaaaaattaaaaaatcttcaTACAAAGAGTTAAAATTAAGTGCCTATTTTTtggcttagttttttttttttcatttgtttttttaagaaaaagtaaGAAAACTTAAGTAAGAAAAGGTACTATATTTTAACACTGGAACAAAATGTTAtgctattttttgtattttaaattttaccttttttaaagagaattttacatgcatgtatatatataaaaaaaaaacatctctttgggagtctatttttgaaaacaaaatatttcatcCTGATGGAATTGATCCCcagaatacattgttttgtactTAATTGTGTAATATGAATTGTTAGgctatatattatgtatgtatccTTTGTAACTTTTTGGTCATCAAAAACAAAGCTATTTCTATCAATACGATTGTATGGACAAAGctattttttataatgaaagAACAGCCTTAATCACCATCTCCTTGGTTTCTCTGTGATGCAGTAAAGTCTGTatcctgaaaaagaaaaagaaaaaaaaatttaCAGAATGAAGGACTTGAAAATTGATAGTTTTCaatttgttcttctgttttaaaccaaattttgtttgtttaatttaattatatttgtttgtttgttttttacagttattatttctaatttaaCAATGCAATGTGTACAAACAGGCTTAATATTCTttctatataatttaatgtttgtgtaaataccatgtatttataaagagaattgtatatatgtttatgtaaggTGCCTATTATTGTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56746 lncRNA upstream 304307 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 530808 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 811452 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 865116 36727950 ~ 36729956 (+) True G45405
TU56573 lncRNA upstream 875083 36719652 ~ 36719989 (+) True G45403
TU56957 lncRNA downstream 206906 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 215386 37818371 ~ 37821575 (+) True AMCG00013618
TU56996 lncRNA downstream 273398 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 470270 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 495005 38097990 ~ 38098531 (+) True G45812
AMCG00013602 mRNA upstream 13640 37574350 ~ 37581432 (+) True AMCG00013602
AMCG00013599 mRNA upstream 76094 37487188 ~ 37518978 (+) True AMCG00013599
AMCG00013601 mRNA upstream 108262 37411666 ~ 37486810 (+) True AMCG00013601
AMCG00013600 mRNA upstream 183623 37406291 ~ 37411449 (+) True AMCG00013600
AMCG00013598 mRNA upstream 201214 37353282 ~ 37393858 (+) True AMCG00013598
AMCG00013605 mRNA downstream 57412 37660397 ~ 37666944 (+) True AMCG00013605
AMCG00013606 mRNA downstream 68121 37671106 ~ 37675959 (+) True AMCG00013606
AMCG00013603 mRNA downstream 73723 37676708 ~ 37683789 (+) True AMCG00013603
AMCG00013612 mRNA downstream 110763 37713748 ~ 37714896 (+) True AMCG00013612
AMCG00013609 mRNA downstream 163006 37765991 ~ 37777845 (+) True AMCG00013609
TU56759 other upstream 274741 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 474501 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 717469 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 856593 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 956924 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 451919 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 627581 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 767671 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 961513 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 1216424 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile