RNA id: AMCG00013613


Basic Information

Item Value
RNA id AMCG00013613
length 1835
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00013613
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37872834 ~ 37876087 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGACCCCACGCTGTGGTCGTGTGCAGATGTGGGTGGGGTGGAGAGCGCCTGCGCAATGTGTCGGTTCCCAGCATGGGTGGGGTGGGCTGTGTTCACAAACAGACACTGACTCACTGGCCTTAAATACGGACACCACattgaaaacagcagcacaggcaCAGCGCTTTACGTGAAGTAATAACTGGTACAAAGTAAACTAAATAGGAATATaacacaagaagaagaaaaatgtgtgctGCCACCGACTGGAAACAAAAATGCCAGAGCGAGTGGAAACTGAAGGGGCGGGACATCCCGGCTCCGGACGGTGTGGACTGGAAATCCGTCCACAGCAAGAAACCGTTCAATCGCAACCTGCTGAAAAACCCTGCGCCACACGGTGACTTCAAAGACTGGACAACCAGCACAGAGAGACTTCCACTGGACAGCAGTGGCATCCCTGAGGGTGCGGCCATCTGCCACCTGCCTCAGTACagCTGGTTCACTATGGAGCAGCATGTGGACCTGCTGGGACAGGGGCTGTGGGTGGAGCTGCTGGACTCCTATCAACCGGACATTTGCATCCAGGACTGGTATGAGGAGACCCTGCTGCACAAGTCCCTCTACCAGCTGCAGGTGAAGCTGCTGGGGGCCGACAGAAAGACAGTGATCCAGGAGCACTCCGTCTCCCCCGAGGAAGACCAGAGCCAAGACGAGCATCGCTGGAAGGAGGTCTCGCACAAGTTCAGAGGCTATGGCCCCGGTGTGAGACACGTCCACTTCCTGCACAGACTAAAGTGCATGAGCATGATCGGATTCCAGGCCACACGAGCGACCGACAGCGCCGTGCTGGTCCGGCTGAGGGACTGAACACCATAACGTTCCACAGGATCCATACAAATAGCACACAAACACCATTAACCCCACACACAACCACCGCACAAACTCCATGAAGCTCCACAAACCCCCACATGACCACCGGCCAAAGCGCAGAAGCAGTGGGAGACACCTCTGCCCATCCTGCAGTGTTTATCCCTGCCAGTGCGGCTGGGCAAAAACGCCATCAGCATCCAAACTTGGGACTCTGGTTCAACCAGTTGGGTCCCCTTTGATGTCCGGTCTTAAATCATTTTaggaataataattttgaaaataaaaatgataatgcaGTGTATCTGCCTGTTTGAATTTTTTCTTCCAGACAGTTCCCCTGCAGAGTTCTAGAACCCAAAGTGTATTCTTTTCTAACCAGAGAGGGGGGAGAAAGACAATTTGCTTTTgactgtatttctttttggCTTTTTTCCACAGGGACATCACTCTGTAGAGTTCTGCAATAGTTACCTATTCCGTAACCAGAAAAAAAGGGAAGGCTAGGAATGAGGATTTTTTCTTACTTGCTTTCCAAGATCATAAACCATGTATCTTTTCGATAACTCCATTAAAGACTAGCATAATAACCCTGAAATAATTAGTGTGGGTGTTTGTTAGTTGATAAGTTATTTAGCAAATGCCTTTATCCAAAACAACTGAACCACTACAACAAATCGACTATTGAATCGAATTAAGGTATAAGATTAGAGTGGTCTACACACAGACTGCAGTTTTGACGGCGGGCCTGTGAAACTCTTTTGGCTCTTACTGATTAATACATGTGCCATGGACCCTTTTGAAAGTTCACAGTGGTGTACCATGgtaaaatatctgaaacacaCACTAGAGTGCAGTAAGCAGGGAATGAGATGACATCCAAAGGaatcactgaaaatgaaagtCTTAAAACTTGTACCATTTTGGTGTTACTGGGAAGTATAACTCATTTTCAAAAAACTGATAATGTACAGAAAGCAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56959 lncRNA upstream 51259 37818371 ~ 37821575 (+) True AMCG00013618
TU56957 lncRNA upstream 56261 37809891 ~ 37816573 (+) True AMCG00013616
TU56746 lncRNA upstream 582069 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 808570 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 1089214 36782569 ~ 36783620 (+) True G45408
TU56996 lncRNA downstream 296 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 197168 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 221903 38097990 ~ 38098531 (+) True G45812
TU57153 lncRNA downstream 335003 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 362452 38238539 ~ 38243152 (+) True G45860
AMCG00013615 mRNA upstream 5800 37860389 ~ 37867034 (+) True AMCG00013615
AMCG00013614 mRNA upstream 19905 37845433 ~ 37852929 (+) True AMCG00013614
AMCG00013618 mRNA upstream 53988 37818580 ~ 37818846 (+) False AMCG00013618
AMCG00013616 mRNA upstream 55070 37805207 ~ 37817764 (+) False AMCG00013616
AMCG00013609 mRNA upstream 94989 37765991 ~ 37777845 (+) True AMCG00013609
AMCG00013619 mRNA downstream 76085 37952172 ~ 37959732 (+) True AMCG00013619
AMCG00013620 mRNA downstream 84376 37960463 ~ 37964226 (+) True AMCG00013620
AMCG00013628 mRNA downstream 90563 37966650 ~ 37979137 (+) True AMCG00013628
AMCG00013627 mRNA downstream 122493 37998580 ~ 38011180 (+) True AMCG00013627
AMCG00013626 mRNA downstream 156522 38032609 ~ 38044550 (+) True AMCG00013626
TU56759 other upstream 552503 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 752263 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 995231 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1134355 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 1234686 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 178817 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 354479 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 494569 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 688411 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 943322 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile