RNA id: AMCG00013615


Basic Information

Item Value
RNA id AMCG00013615
length 2530
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00013615
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37860389 ~ 37867034 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGACGTCACCCGAGGACCACACTGCGTGCCAGCTCGAGCGCGGAGCAGTCGCCGGCGCTGCGTTTCTGCCGTCGAGTTATTACCGCATAAAACAGCGAAACAACGCCGAGCAGggtcttgttttctttgtcttaGTTTAGTTCGtctacttttttttgtttgtttgtttctcccgCCGTCGAAATTGTCGCAGGAGAACAGTGTTTGCGCGTGGATGTCTGTGCAGGGAGTGTCGCTATGGCAGTGTGTGCGCTCCGTGCTGTGCAGCGGAGTCCTGCTGCTGGCCTTCGCACTGGACTTCACCACAGAACACGGGGGCTTCCGCTGTGACCCCTCCCCCTGCCGAGGCTTCCCCCACAAAGGCAAGATCCGCTACTTCTGCGAGCCGGGCTTCTACCTCCCCAAGAACGAGCATGTCGCCCACTGTAACCAGGGGACATGGACCTCCTCCCCGTCCGCCTGCGCCCCCATCCTAGTGGGAGACGGGAGCCCCGTGGACAGGGACGAGCAAACTGTTCACAGCGTTGCAACGACAGCAGTTGGCGTGTCCATCTTCCTCCTAACAACCACAGTCTGCATGGTTATAAAGTCCCGCCTCCACCCTTGTCACTCACAGAGaAGACGGTCTTCAGACCAGCTGGACCTGGTAATTGACGGCTTTCCAGTCTTGCCATCCTATGAGGAGGCAGTATACGGGAGCTGGGGTGAGCGCATCCCGCCGTCCCAGGGACCAACTCAGCTCCTATTGGCTCAGGAGCAATCTGGACCTCACCCACAAACTGGCCAACCACAAACAACTGTCCCCTTCCAGCCAGCCAATCAGACTACAGACCTTCAGCCCCCACCTTATGAAGAGGTCCAATCAGATCCCAGAGGTGATGAGAGGGGAGAAGGCCAAAGAGAGATTGGTCAAGCGCTGAGAATCATAGTGTCCTCTGACAAGGATAACTAGACTGCCACCCTGGAAGGCCGTTTCCTGAACAATGTTGCTGTTAGGTTGGGTTCGAGGGTGCAGTGCAATAACTGACCTGAACCGGCGTTTCTGAATGTAAAGACTGGTCGGCCCAGAGTCCACAGCAGTCCGGTGTTTAGAGAGAGTCCGCCATGACACAATATTAGGTGGGAATGAGGATCTTGAGCTGAACAGAACGGTTGCACGGTTTCAGGCTGCACTGTCCAACAGCCCCACCAAAGCTGCTGTGGAGACACGGCTGACCGGTGCAACGGGAGGGGTTTGTGTGGAGTTGATCTGTGTACTAGTAATGTTGTTTCCATGGCTGTAGTGGGAACTGACTCTTCATGACTCCTGTCTGTGATGGGAACCTCGTTCAGCGGAAAGTGCTTCTGTCTGAACTGTCTAAACCAGCCCCAGAACAGAATCACGAAGGAATTTAGCACCTGACTTTCATTGGGAACagttttatgatttaaaaaaatatatatatatatatgtttgcatGGAACAGTTCTGTCTCATCCAGTTGTTTATGTAACCCGCCCTCAGTCATTGGCCTGACTGAGAAAGGCCGTGACAGATATACCACTGTCCGCCAGCCCCCCTGAATGACACGGTTCCTAAAGCACTTGGATATAacttcataattattattattattgttgttgctgttataaTCAAGTTGCCATTCCTACTCACAAGGATTACTTTGGTTAAACAAAATCAGAGGTTGACCAATAATTTAACTCGACTGGATGCcgctcctctcgtttgtaactAAATAAACCTGACTGTATATATCTGTGATTTCTGAAACTGGCCTGTTTCTGTGTGGTGTTCTGCCGACCTGCCGGGTGACGGCACTGAAACTTTTTATTACTGTACTCCTGCAAGGGGGggaaaaactacagaaaatgGCAAAGAAACCAACTGTGTTACCTGTTGGATCCTGCTGTGGACTGGAGGGCATCACAGTCTGAGTCACATGGTCAGAATGAAtgctatctatttatttataattttaagttTGATTATGAGTCAGtgacattttcttgtttatatttaatgtggTTTTGAATCGATATGCGAGTCGAGACCAGGAAACAGAAGCCTGCAAGATGCTCCGCTCAGCCAGACTGTGAATTAATGACCTACTTTTtcgctgtgttgtctgtgctcACATCTGCCATTTAAGAGCCCCAGAAACCTTTATGAAACTCCTTGGCCTGTGtagaaaaaatgaatgtgccttttagttttcttattagaaaaataaaacaaccactataaaatgaaaatcttaatatattttatgtaaatgaaaGAATGAATAGTTTGTATACAATGCATATCCATATATTAAAGTATATTCTTTTGTTGATGCTTAGTTTTTGTCCCCTTCTCACACGCTCGGTCTCTGACCacatccttttttaattttatttccccttCCCTTTTTGTAACCTAAATATTTCCGTCTCAACGCCTTGAAAGCTCAAACCACTAACAAGAATGAAACTAGATCgaatgtggttgttttttttgttaatgggGAGGGGAAGGGAGTTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56959 lncRNA upstream 38814 37818371 ~ 37821575 (+) True AMCG00013618
TU56957 lncRNA upstream 43816 37809891 ~ 37816573 (+) True AMCG00013616
TU56746 lncRNA upstream 569624 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 796125 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 1076769 36782569 ~ 36783620 (+) True G45408
TU56996 lncRNA downstream 9349 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 206221 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 230956 38097990 ~ 38098531 (+) True G45812
TU57153 lncRNA downstream 344056 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 371505 38238539 ~ 38243152 (+) True G45860
AMCG00013614 mRNA upstream 7460 37845433 ~ 37852929 (+) True AMCG00013614
AMCG00013618 mRNA upstream 41543 37818580 ~ 37818846 (+) False AMCG00013618
AMCG00013616 mRNA upstream 42625 37805207 ~ 37817764 (+) False AMCG00013616
AMCG00013609 mRNA upstream 82544 37765991 ~ 37777845 (+) True AMCG00013609
AMCG00013612 mRNA upstream 145493 37713748 ~ 37714896 (+) True AMCG00013612
AMCG00013613 mRNA downstream 5800 37872834 ~ 37876087 (+) True AMCG00013613
AMCG00013619 mRNA downstream 85138 37952172 ~ 37959732 (+) True AMCG00013619
AMCG00013620 mRNA downstream 93429 37960463 ~ 37964226 (+) True AMCG00013620
AMCG00013628 mRNA downstream 99616 37966650 ~ 37979137 (+) True AMCG00013628
AMCG00013627 mRNA downstream 131546 37998580 ~ 38011180 (+) True AMCG00013627
TU56759 other upstream 540058 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 739818 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 982786 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1121910 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 1222241 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 187870 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 363532 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 503622 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 697464 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 952375 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile