RNA id: TU56959


Basic Information

Item Value
RNA id TU56959
length 2952
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00013618
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37818371 ~ 37821575 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTCTGAGCGCCTGTCTGTCATCGCGGCGCGGATGCGGCTCCTCAATGCACCGCAGAAAACTAGCAAAGACAATGATTTCTGCACGGAAATGTGAGCAGAAACTATAACGCAGGACACAAACGGGACACTGCCTTTCTAATACAGTCTCCGCAATAGGGGGAACCGCGTTGACTGACTTAAGattgtatatacacacagaaaagcAGCATGAGAAGTCACAATAAGGACGCGCACAAGGGTGCCAGCGCGGAGAGAAGGCCCACTTACCCGGGGGAGATCCGGGAGAGGGTGGCCAGTCGGGCCACGAACAAATGGGTCAAAGTGGCCATGGCGATTGCCTATTTCTTCAGCATCTCCCTGGCGGCCCTGATCCTGGTCATCTACTACGGCGTGTTCTGGTCTCCGAACAACAGGAACAACAGCACCGCAGTCAACCTGACGTCGTCCCAGCTGTGCCCCACGAAGCAGTCCTGACAGCAGGGCGAGGGCGGCGGTCCCGCAGCACGGCGTGAGGagcggacggacggacggaccgACGGACTGCACTGAAGGGCATTTAGGGCGAATGAAGCGCAAGTTCAATTGACAGGCACgaaaaaaccaaaaaagcatCCAGGACAAAACCCACCAGGACAGAAATATCCGCTCCCCGCCGGGCCCGGGCGAGCACAGAGGCTGCTGCCTGATCTGACAGATGTGTCCTGCGGGGAGATGCAACTTTAATGCAGTACAGCATGCCAGGTACTGGGGCACGACATGACCATAGAGTGGCAGAGACTGTCTTATTGAGACAGGGCAAGAAGCAGCTGAGTTACCAACAGACACAcggacaacaacaaaaacaggcatCGGGGTTTCTTAACACAAACTTGTATGAACTAAACATGAAGGtgtgttaaatgcattttatggttttgtatgtatgtatgtatgtgtgtgtgtagtgtaagACATCATATTATCAAGGCAATTGACTACTCGAATCGTTTTCCTCAGATTCCCTGTTTGCAGATGTCTCTTGTCAGGGTTCAAGCCTCGAAAGGAGCTATCATATCGGTAAATGGTTATTGAATCGCACTGGGCATCAATACAATAAACCGCAACCACTGTGACCATTAGTGCATGCAAACAAATCATTGCCTTCAATATGATGCGAGAGAGCCCGATATGAATAGGTCTGTAACCGTGTTGGCGTTTTAAGTAGTTGAAGTGTATATCTGCACAAGCAAAGACAGTAAACCCTGCCGGAATCAAATCGAGTCAAAATAATCAGGACATGTGCTACGCGGACGGTTTGCTTCAATGTACACTGATGCCTTCAGTGTCGATGGTTAATTGAGGGATGCAAATAAGGTCGAGTCGGTGCCTCCAGCCTCCTCTTTGAGCAGAACACGGGTCCGATTATACCCCGCTGTGAGGGTTAGACAGCCCCCAAGCCCGTCCAGGCCGTGTATAGTGTCTGCACGCACAGATGCACTCTTATGCTAGCGTTGTCATCCTCCCCAGTCGTGACGCAGTCGTGCTTTGCCATtaaagcaatgcaatgcaatgcaacgCCGTGCTGTGCACTAACTGTAGTTCAATCACCCCAGGGCTGACTGCGCCGGCTGGATTCTGCGTGTCCACAGCGGTAAGAATCAACTGTACGAGATCGCTTTCTGAATCGCTGTACGTGTTGTGTGCCATTCAATGAGCAGACCCGGGGTTATTCTGTATCATACTGACAGCCTTTGAGAGGATATCTCCAACCACAAGCAAATGCATGAAATGACAATGGCTACATTGTTTCGGGCGCCCAAGGTCAGCCCGAGGTCACAGAGGAGCTCAACACGGGCGCAATGGACACGgacatcaaattaaataatagatCATAGCACAGCTCGGGTTGcagttattttcatattgttcAGTTCACCCAGATGTCAGACTGGATATAGCCTGTGTTTCAACACAATCTCGGCATTTAGTTTTaggaattgtttattttgacatttacaaAGTGCGTGCGTGTCTCTAACCCATGTATGTCCATTTCTGTCCATTGTTTTGGTAGCCTGCGAAGACTGGGTAGTTGAAAAGCTCTAGATTGACGACTGTGTTATTAGTACCAGATGTAGCGCAGTACTGGATTTCATTCCCCCAGGTTTAAATGTCCGTGACGTGGATGGCCGTGTTGTACTAGGAATATGCACTCACTCCTGTAAAGTAGCTGCTCTCGGTGTTTTTACTACGTACACTTTATTCCTATGTCATATCTGTTGGtccaatgtatatatttaggtTTTTCTTTTCGCTTtcttaatgtatacattaggGAGTTAAAGCCATAATTttgtagtaaaaataaaatgcatattttaaaataatatcaaataaaaagtaCTAATAAGTGTCTAATTTAGCATATGTAGTATTGTACTTAACAGTGGAATTTGATGACACCTTTAGATAAACTGTAGTGTAAAAATGACAGTTGGAATAGGGAAGTccagttttttttgttacaatcagacaaacacaaagactATGGGCTGCTTTTCCAACAGAATGCCATTCAGTTGTCCTTTGTGTCAGTAGCTGTTCTGTGACACTTTTATCACAGAACACGTGTTCCAATTTGAACAGCACACTGTGGTTTTAATTAACCATTCATTATTGTTAATGTGCGTACATAAACCATTTATATGGCATATATCTCCATACAACGTGATTGATCGTGAATTAAACACAACACACGCCTATATAGAAAGGTGGTTTTCCCCACACACTTCCACTTGTCTGGATGACCCAACACGGACTGCACACTACCAGTGACTGCAGACTAATTAAAAAGAATACGCCTACCAATGCAAAATGTATCTTGTGCAATATtttctcagtttatttattttttttttttacccaatgttttctatttcttGTTCACTcagcattgttgtttttaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56957 lncRNA upstream 1798 37809891 ~ 37816573 (+) True AMCG00013616
TU56746 lncRNA upstream 527606 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 754107 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 1034751 36782569 ~ 36783620 (+) True G45408
TU56575 lncRNA upstream 1088415 36727950 ~ 36729956 (+) True G45405
TU56996 lncRNA downstream 54808 37876383 ~ 37932198 (+) True G45737
TU57092 lncRNA downstream 251680 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 276415 38097990 ~ 38098531 (+) True G45812
TU57153 lncRNA downstream 389515 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 416964 38238539 ~ 38243152 (+) True G45860
AMCG00013616 mRNA upstream 607 37805207 ~ 37817764 (+) False AMCG00013616
AMCG00013609 mRNA upstream 40526 37765991 ~ 37777845 (+) True AMCG00013609
AMCG00013612 mRNA upstream 103475 37713748 ~ 37714896 (+) True AMCG00013612
AMCG00013603 mRNA upstream 134582 37676708 ~ 37683789 (+) True AMCG00013603
AMCG00013606 mRNA upstream 142412 37671106 ~ 37675959 (+) True AMCG00013606
AMCG00013614 mRNA downstream 23858 37845433 ~ 37852929 (+) True AMCG00013614
AMCG00013615 mRNA downstream 38814 37860389 ~ 37867034 (+) True AMCG00013615
AMCG00013613 mRNA downstream 51259 37872834 ~ 37876087 (+) True AMCG00013613
AMCG00013619 mRNA downstream 130597 37952172 ~ 37959732 (+) True AMCG00013619
AMCG00013620 mRNA downstream 138888 37960463 ~ 37964226 (+) True AMCG00013620
TU56759 other upstream 498040 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 697800 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 940768 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1079892 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 1180223 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 233329 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 408991 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 549081 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 742923 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 997834 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile