RNA id: AMCG00013619



Basic Information


Item Value
RNA id AMCG00013619
length 3017
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00013619
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37952172 ~ 37959732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACACCGGCGCATCCTATGTAACTGCAGTCAGAAATAGTGACGATCTCTGCTGGAGCGGAGAGCTGTGTTTGGTCATGGAGGGGTTCAGGGGCCGAGAGTGCGCCCAGGCCGTTTGCCATGAGTTGGATAACAAGGCATCGAGGGAGGCAGGGATCAGCTTTCACCGATTCCCGAAGAATCCCGAAAGGAGGAAGAGATGGGCTTTCTTAATGGGCCGCGAGGACAACTGGGTGGCTAAGGACTGGAGTGTGGTCTGCAGCAAGCACTTCAGGCCTGAAGATATTGACCGCACCGGGCAAACCATCCGTCTCCGGGCTGGGGTGGAGCccagcattttttttcatttgcctGGTAATCAGCAAAAGAAAACTAGAAGCAAGGAAACACGAGCTTCGCAATCTCTATCTGCCGCTGTGTGTCAGTCCAACTCCAGCTCAAATAAAATTGCGCACTATGAAGTTATTAGTGAGTTCCACAGCTACTGCGCCCCCACCGAGGCCAGCCTGAAGCACAAGTCACGGCCGACAGTCGACCACCGTGAGAAGCTGCAGCGAGATTTGCGGAGCGCCACTTCGGGAGAGAAACGCCGCCGGAGGACCAAATTCCCCATGCAGCTGTTCACCAAACCCAGGCGCCGGGGCGGCTTCAGCCAGGCGCAGATTGACCTGGCTCTGGCGCTTCATCTTTATGGACCGAAGGCATACCAGTACCTCAGAGACACTGTGCAGCTGCCTCTGCCCAGCCCTGCTTCAATGCTGAAGGTTCTCGGGCAGAAGGCGGCAGAAGATCCTGAGACCTACCGGAACGTGTGTCTGATGATGGACGGGATTGACATCAGGAAACAGGTCTGCTACGATGGCTCCCTGGAGAGAATGACAGGATTTGTGGACTTGGGGGACAACCTGGAGAGTGATGACGAGGCATCGCAGGCGCTGGTGTTCATGGTGGTTGGGTTAAGGGGTTATTGGAAGGCACCCATCGCCTACTTCCTCACAGCAACGCTGGAAAAGAGGGCCCGGGCCACGCTGCTGAAGCACGCTCTGGAGCTGCTGTCGGACGTCAAGGTGGATGTCCAGGTCGTGACCATGGAGGGCTCGTCCTCTCACCTGTCCATGTGCAGAGACTTGGGCTGTGATTTTCACATGGACAGATTGGCCACCTTTTTCCCTCACCCGTCCACAGGGAACAAAGTGTTCGTGGTGTTGGACCCACGCCGCATGCAGGTCTTGACCAAGAACCTGGTCCACTCGCTCGGGACAATCCGATCGAGCAGCGGAGAGATCGGCTGGCGTTTTATCAGCAGCCTGAGGCGGGTGCAGGAGGGCCTTGAGCATGGCAGAGAGGTGACTGCCGGACAGCACCGCCACGCAGATCTGCCCATGGAGGTGAAGCGTAACGCACAGGTGTTCAGCAGCTCGGTCTCCGATACTATTCAACGCCTGTGTAAGGCTGGACACCCTGATTTCCAGGATGCCATGTCGACTGTGGAGTTCCTGCAGCTCATAGGTCAGCTGTTTGACGTCCTGAACTCCAGGAACCCGAGGGCAAAAGGATACAAGTCCCCAATCAGAGCTGAAAACTGGAATGAGGTTTCAGAGTtcctgaagaaaacaaaagcAGACAAGATGGGACCCCCCTATTCACCTCTAACAGaaggCTGGGCTGGGTACCCTAACGCAGCTCAGTTCAGAACAGCCTTCCAGAAAGTCCTGGCCAGGTGGGTCAGTCCTCTGAGCAGGCCAGGCAGAGCAGGGCAGCTGGGGGAAACCACGAGTCCTGCTCTGGCATCGGCTGCATTTCCTGGATCCCAAGTCCTGTGCGACGATGACAGAGATGCGATGGAGGATGGCGATTTGTTTGTACAAGATGCCCACCTGAGGATTGCCGTGGAACCCGATTACTCGGCCCCCAGGCACAGAGGGGTCCTGGCAACTGCAGAAAATTGTGTCTCGTATAGTGCGGGGTGGGTGGTCCGTCGAGTGAGTGCCATCATCTCCTGCAGCACCTGCACAAACTCCCTGCTCTCCGGCGAACCAGCCGAGCATGCTCAGTCCTATCGCTTGCTGCAGCTGAAGAGTGACGGGCGCTTGGTGGTGCCGTCTTCAGGTACAGTGTCTATTTTGCACGAGTGTGAAAGGAGCATTGGCAGAGTAATGAAGGCACAGTATGCTGAGGGAGTCTGCACACTAGAGCAAGTATCGAGACTGGTTAAGGAAACTATAGGGCACAAGGATGTGTTTGGTCTCGGCAGTCACAGCATGGAGACACAGTATGGGATTGATAACCACCATTTCGATCTCATATCTGTCTTGGTGCGGGTTTATTACCAGCTCAGGCAGCGCCACATCAAGAACACGTACAGCCTTCGAAATCGGGGACAGCTAGGGAGAAGTGTGTCGAGGAATCAGCTTGTGTTTTACTGACGAGGAAAAGACCTGCAAACTGTGaggattatatttatatttgttgctTCCAATGTTCGTTTAATACAGATAGAGACACAGGGCACCCCTGCACTCTGGGCAACAGAGAACATCATCGCACCTACAAATATATGCAATTTGCTTgatgattttaatgaaaattgaaGCTGCACAGAAAATCAGGTGCCCTCTCATTTTCAGTATGAAAACCAGTAGGTGAAGAATTGTTTCACTTACTCATGGATCTGATTGGAGGTGCtgtgtattatatgtattttatatttgaattgtatgaTGCAATAACAGTGTATTTTCAATTATGTTATGACTGTATATTAAACAATGCATTCTTGTGCATTTGGGTACGTTTTCTAACTTGTAATAAGCTAAACTTAATGTAAATATCAGTGGATATAAATCCTATATGtagaaatcaatattaatcAAAGATGCATATTGATGGTGATGAACAGACTCAATGAAGAACACATTTGGAAATCTTATTTTGAAAGTGCCTGAAGTTACTGAAATAAACCTGTGCCTAAATTGAGCGTTAATTATGtgtgaattgctttgttttcagtgaaGTGCTG

Function


GO: NA

KEGG:

id description
K23209 THAP9; DNA transposase THAP9

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU56996 lncRNA upstream 19974 37876383 ~ 37932198 (+) True G45737
TU56959 lncRNA upstream 130597 37818371 ~ 37821575 (+) True AMCG00013618
TU56957 lncRNA upstream 135599 37809891 ~ 37816573 (+) True AMCG00013616
TU56746 lncRNA upstream 661407 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 887908 37063957 ~ 37064264 (+) True G45499
TU57092 lncRNA downstream 113523 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 138258 38097990 ~ 38098531 (+) True G45812
TU57153 lncRNA downstream 251358 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 278807 38238539 ~ 38243152 (+) True G45860
TU57162 lncRNA downstream 286224 38245956 ~ 38246418 (+) True G45862
AMCG00013613 mRNA upstream 76085 37872834 ~ 37876087 (+) True AMCG00013613
AMCG00013615 mRNA upstream 85138 37860389 ~ 37867034 (+) True AMCG00013615
AMCG00013614 mRNA upstream 99243 37845433 ~ 37852929 (+) True AMCG00013614
AMCG00013618 mRNA upstream 133326 37818580 ~ 37818846 (+) False AMCG00013618
AMCG00013616 mRNA upstream 134408 37805207 ~ 37817764 (+) False AMCG00013616
AMCG00013620 mRNA downstream 731 37960463 ~ 37964226 (+) True AMCG00013620
AMCG00013628 mRNA downstream 6918 37966650 ~ 37979137 (+) True AMCG00013628
AMCG00013627 mRNA downstream 38848 37998580 ~ 38011180 (+) True AMCG00013627
AMCG00013626 mRNA downstream 72877 38032609 ~ 38044550 (+) True AMCG00013626
AMCG00013625 mRNA downstream 91489 38051221 ~ 38053561 (+) True AMCG00013625
TU56759 other upstream 631841 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 831601 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 1074569 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1213693 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 1314024 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 95172 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 270834 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 410924 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 604766 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 859677 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile


AMCG00013619 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

AMCG00013619 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00013619 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.