RNA id: AMCG00013627


Basic Information

Item Value
RNA id AMCG00013627
length 3254
RNA type mRNA
GC content 0.57
exon number 24
gene id AMCG00013627
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37998580 ~ 38011180 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtctgtgtgcagcagcggggggggggcagaggctGATAATTCCAGAGCTCTGGCTAAGAATGGGTGTCCTTGCCGGAGCTTGCGTAGACGGGGAGTGATCGGGAGGCACAGAGCGAGTGGGACCTTCACGGCCTGGTGTAACTCTCATCTGCGTAAGGCCGGCACGCAGATCGAGAACATCGAGCAGGACTTCAGAGATGGGCTCAAACTCATGCTGCTGCTCGAGGTCATTTCAGGAGAAAGGTTACCCAAGCCCGAGAGAGGGAAGATGAGGGTCCACAAGATCAACAATGTCAACAAAGCCCTGGATTTCATCGCCAGCAAGGGCGTCAAGCTGGTGTCCATTGGGGCTGAAGagaTCGTGGACGGAAACGCCAAGATGACTCTGGGCATGATCTGGACCATCATCCTGCGCTTTGCCATCCAGGACATCTCTGTGGAGGAGACCTCTGCGAAGGAGGGACTGCTGCTGTGGTGTCAGAGGAAAACCGCTCCGTACAAGAACGTCAACGTGCAGAACTTCCATATAAGCTGGAAGGACGGTTTGGCGTTCAACGCGCTGATCCACCGGCACCGACCCGAGCTCATCGACTACGACAAGTTGAGAAAGGACGACCCTATCACTAATCTGAACAATGCCTTTGAGGTGGCGGAGAAGTACTTGGACATCCCCAAGATGTTGGACGCAGAAGACATTGTGAACACAGCTCGCCCTGATGAGAAGGCTATAATGACCTATGTGTCCAGTTTCTACCATGCCTTCTCGGGAGCACAGAAGGTACCCCACTACAGCTCGGGGTCACAGGCTCAGGGCTGCGGGGCCTGGGGCGGTGGTGTAGGGagagagagggtgggggaaGACATCGTGGGCACGCTGAGGCCTGATGAGAAGGCCATCATGACCTATGTGTCCTGCTTCTATCATGCCTTCTCTGGGGCACAGAAGGCTGAGACTGCTGCCAATCGTATCTGCAAGGTCCTGGCTGTAAACCAGGAGAATGAGCACCTGATGGAAGATTACGAGAAACTTGCCAGTGATcTGTTGGAGTGGATCAGGCGCACTATCCCCTGGCTGGAGAACCGGGCCCCGGAGCGCACCATGCATGAGATGCAGCAGAAGCTGGAGGATTTCCGTGGGTACCGGCGGGTCCACAAGCCACCCAAGGTCCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACTCTGCAGACCAAACTGCGGCTTAGTAACCGGCCCGCCTTCATGCCCTCAGAAGGGCGCATGGTGTCGAAGGACTATGAGACGGCCTCCCTGTCCGAGGTCAAGGCCCTGCTGAAGAAGCACGAGGCCTTTGAGAGCGATCTGGCGGCCCACCAGGACAGAGTGGAGCAGATCGCAGCCATCGCTCAGGAGCTCAAtgagctGGATTACTACGACAGCCCCAGTGTGAACGCTCGCTGCCAGAAGATCTGTGAGCAGTGGGACCGGCTGGGCTCCCTGACGCAGAGCCGCCGGGAGTCCCTGGAGCGGACAGAGAAGCAGCTGGAGTCCATTGATGGGCTGTACTTGGAGTATGCCAAGAGGGCGGCACCCTTCAACAACTGGATGGAGGGAGCGATGGAGGACCTGCAGGACATGTTCATCGTGCACAACATCGAGGAGATCCAGGGTCTGATCTCTGCCCACGAGCAGTTCAAGTCCACTCTACCCGAGGCTGATAAGGAGCGGCAGGGCATCCAGGGTATCCAGTCCGGCGTCCAGTCCATCGCCCAGCAGCATGGCATCCGGCTGGCCGTGGGCAACCCCTACACCTCCATCACCCCCCAGGCCATTGACAGCAAGTGGGAAAAGGTACAGCAGTTGGTCCCCCAGAGAGACCAGGCACTGCAGGAGGAGTTGTCACGGCAACAGTCCAACGACCATCTCCGCCGGAAGTTTGCCACCCAGGCCAACATGGTGGGACCCTGGATCCAGAACAAGATGGAGGAGATCGGGCGGATATCGATCGAGATGAACGGCACGCTGGAGGACCAGCTGAGCCACCTGCGGCAGTACGAGCAGACCATCATCGACTACAAGCCACACATCGACACTCTGGAGGGAGACCACCAGCTCATCCAGGAGGCCCTTATCTTCGACAACAAATACACCACCTACACCATGGAGCACCTGCGTGTGGGCTGGGAGCAGCTGCTGACCACCATTGCTCGCACCATCAACGAGATCGAGAACCAGATCCTCACCCGCGACGCCAAGGGCATCAGCCAGGAGCAGCTGCATGAGTACAGAGCCTCCTTCAACCACTTCGACAAGGATCACAGTGGGGGTCTGATGGCGGAAGAGTTTAAAGCCTGTCTCATTAGCTTGGGCTACGATGTGGAAAGCAACAAGCAGGGTGACGCGGAGTTTGCACGCATCATGGGCGTTGTTGACCCCAACAACAGTGGGGTTGTGACCTTCCAGGCGTTCATCGACTTCATGTCCCGAGAAACGACCGACACGGACACCGCAGACCAGGTCATCGCCTCCTTCAAGATCCTGGCCGGAGACAAGaACTACATCACGGCGGAGGAGCTGCGCAGAGAGCTGCCCCCGGACCAGGCGGAGTACTGCATCGCCCGCATGGCGCCCTACATTGGCCCCGACGCTGCCCCCGGAGCCCTGGACTACATGTCCTTCTCCACCGCCCTGTATGGCGAGAGTGACCTCTAAGCCCCACCCACGACCCCTGACCTTTCCCATCTACCCCGACACCCCAATCTCAGTCCCCAGCTTGACTCTGCCTGTGCTGTTTGGTTCAAGGTTAGTGGCTAGGCCTGGTCTGGGTTAAAGGTCAAGGGTTACGGATTTTGACTGAGTTGGCAAGGGGCTTTTGGTCCTTTGACCTCCGACCTCCAACTTCAATGCTCACCTCTGAGTCAACTTTGACACCCCAGACCCTCTTAATTACACAACATGACACCCTTTCTCTTACCCTAATTGAATTTTTGTCCTAGTATATATTGGGAGCCTGACCTATGAGCTCAGACCTGATCTATTGTAGTTGTAGAGCTAGTCTGTTCTTGTGGATGAGGTTATCCAGACCCTATGACCAGATCTAGTCCAGGTCTCGCCCTGGTCTGTGTTTTAGGAGTATGGGGTTGtttgtgggtggggggtggtgtgGTGAAGTGTGTAGGGGTTGTGTGGGCCATTTGGGCTttggagagagtgagtgagtttagttttgcattgtgtgtgtgtgtgtgtgtggagagagagagagagagaga

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56996 lncRNA upstream 66382 37876383 ~ 37932198 (+) True G45737
TU56959 lncRNA upstream 177005 37818371 ~ 37821575 (+) True AMCG00013618
TU56957 lncRNA upstream 182007 37809891 ~ 37816573 (+) True AMCG00013616
TU56746 lncRNA upstream 707815 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 934316 37063957 ~ 37064264 (+) True G45499
TU57092 lncRNA downstream 62075 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 86810 38097990 ~ 38098531 (+) True G45812
TU57153 lncRNA downstream 199910 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 227359 38238539 ~ 38243152 (+) True G45860
TU57162 lncRNA downstream 234776 38245956 ~ 38246418 (+) True G45862
AMCG00013628 mRNA upstream 19443 37966650 ~ 37979137 (+) True AMCG00013628
AMCG00013620 mRNA upstream 34354 37960463 ~ 37964226 (+) True AMCG00013620
AMCG00013619 mRNA upstream 38848 37952172 ~ 37959732 (+) True AMCG00013619
AMCG00013613 mRNA upstream 122493 37872834 ~ 37876087 (+) True AMCG00013613
AMCG00013615 mRNA upstream 131546 37860389 ~ 37867034 (+) True AMCG00013615
AMCG00013626 mRNA downstream 21429 38032609 ~ 38044550 (+) True AMCG00013626
AMCG00013625 mRNA downstream 40041 38051221 ~ 38053561 (+) True AMCG00013625
AMCG00013629 mRNA downstream 43717 38054897 ~ 38069645 (+) True AMCG00013629
AMCG00013630 mRNA downstream 65825 38077005 ~ 38087811 (+) True AMCG00013630
AMCG00013631 mRNA downstream 107144 38118324 ~ 38121804 (+) True AMCG00013631
TU56759 other upstream 678249 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 878009 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 1120977 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1260101 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 1360432 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 43724 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 219386 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 359476 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 553318 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 808229 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile