RNA id: AMCG00013630


Basic Information

Item Value
RNA id AMCG00013630
length 2181
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00013630
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38077005 ~ 38087811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGCATTTTCATGCAGTCAGAGGAGGGCGACACGGCCCGAGCTGCCTGGAAACTGCGGCGCACCATACAGCTGTACCAGGACACCTTCACTGTCATCGAGAAGGAAGTTGACATTGGGCTGGCAGCAGATGTGGGGACTCTACAGCGCCTCCCCAAAGCGATTGGCAGCCGGAGCCTGGTGAATGATCTCGCTCTCACGGCCAGGAAGATGTGGTCTGATGAAGCCAAAAGCTGCGGACTCATTAGcCGTGTGTTTGCTGACCACGAGGCTCTGATGGCGGGGGCTCTGGCCATTGCCGAGGAGATTGCGGCCCGTAGCCCAGTGGCGGTCCAGGGCACCAAGGTCAACCTGCTGTACTCCCGTGACCACAGTGTGCAGGAAAGCCTGGACTACATTGCCACCTGGAACATGAGCATGCTGCAGACAGAGGACATTATCAAGTCGGCACAGGCTTCGCTGGAGAAGAAGAGTCCCAAACAAGTGCCTTTCAGCAAACTcATGTCAGTGGTGGTTCTGCTGTACCTCCTCCTGGGTGGGGTAGTGCAGAGCCCCCTGATGGAGGGGGAAGATCAGTGCAGGTTGGAGATGCAGGTCCATGACAGGGTGTGGGAGAGGTATCTGAACCTCATGCTGCAGACCTTTCACCAGGAGATCAACTGCCTGAGTCAGAGGGCATCAGCAGAGGTCATGCTTTGGTGGAGTTGGGAGGAATGTACCTGGAGGACTCTGACCCGAAGGCATGGGTACTGGTTTCTGGGAGTGGGGTTGGTCCTGTGTGGGCTGGTCTTCTGGGGCCTGTGTGGGCTAATCTTCTGGGGCCTATGCTTtaggaggagaaggtggaagAAGGAGGTTCTAGTTGACACTGTGGTTTACAGAGTACAGGGACAGGTGGATGAGGATGGATCTGAAGGAGGACGAGAGGCAGACACAAATTCGGAGATGGAGACAGAAGCAGAGACAGAGGTTGACACAATGGCAGAGCATGAGAAAGAAGCAAATGCAGAGCCAGAGGTTGACACAATGGCAGAGCAGATGCTGACAGACCAGCTTAAAGTCACCTCTAAATGGGGTGTAGGCGGCTCAGGCAGAGATAGCTGTTTTGTCCAGGGAGTGGTGGAACATCTCCTGGATGTGGCACGGGGCTCCAGCCAGCTGTGTAGTGATGTGTTGCAGGAAGGCTGTCTGGGTGTGGGCAGCCAGTTTGAGGGCTGTTGGAACAGTGGCAGACAGCAAGAATCTGACTTTGATATGTTGGTGGTCATCAGCCCGCCCTACGCTTTCTCCTTCCATGTGGAGCTTGGCTATAGCGAGACTAGCAATCCCTTGGCTTGGGTGCCCCCCACTGACTACCACGGAGAGGGAAGGGTGCGTTTAATGAGGGTCTTCCCGCCCTCTCTGGGAATGTCACCCAGGCCTTGTGAGCTGAAGAGCAGTGTGGAGTGGATGGTACCCGGGGAGTACCTGGAGCCAGCCCTGGTGCTGCAGTGGCTGGGAAGTGTTCTAAAGAAGTCCTGGGGCCAAAGAAAAACTATGAAGGTGAGCTTTGGGGAAGCGGTGTGTCCTTGCAGGCTGCGGGTCGAGAATCCTTCAGGCCAGAGCCTGTGGGTGAACCTGGTGCCCGCAGTGAGAGTGGAAGGCACCGATGTGTTCCTGGTGACCCAGGGACCCGTACTGCGACCTCCCGACCAGTGGAGCCAGTGCTTCAGTGTGGACGAGGGCAACTTCCTGCGGGACGTGACTCAGAGGATGGCGAGTGATTCGTGCCACCTCAAATGTCTGCGTATGCTCTCCCTCGCCAACACCCAGCCAGTGTCTCGCAGCCCCACAGtccccttctcctccttcctGACCTCCAACCATCTGAAGACGGTCCTGCTGTTCATGTTGTCTGTATGGCCCAAGCCACAGTTTTGGACGGAGGGGCAGCTGGCTGTGCGGCTCCAGGACGCTCTGGATTTGCTGCGGAGACACCTGGAGCACAAGCAACTCTTCCACTTTGCGGTGTGGACCCGGGCCCTGGGCTTGCGCCAGGAGTTCTCCCAAACCTCACCCATCAACCTCTTCGAGCCACTGAAGCAGGACCCCAATCTGCACATGGTGGCAATGAAAGACCTCGAGCGGCTAACTGCACGGCTCAGTCCCTTCACACAGACGTCTGAAGTCCAGACATAG

Function

GO: NA

KEGG:

id description
K12663 ECH1; Delta3,5-Delta2,4-dienoyl-CoA isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57092 lncRNA upstream 3153 38073255 ~ 38073852 (+) True G45805
TU56996 lncRNA upstream 144807 37876383 ~ 37932198 (+) True G45737
TU56959 lncRNA upstream 255430 37818371 ~ 37821575 (+) True AMCG00013618
TU56957 lncRNA upstream 260432 37809891 ~ 37816573 (+) True AMCG00013616
TU56746 lncRNA upstream 786240 37251201 ~ 37290765 (+) True G45538
TU57100 lncRNA downstream 10179 38097990 ~ 38098531 (+) True G45812
TU57153 lncRNA downstream 123279 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 150728 38238539 ~ 38243152 (+) True G45860
TU57162 lncRNA downstream 158145 38245956 ~ 38246418 (+) True G45862
TU57163 lncRNA downstream 162216 38250027 ~ 38252663 (+) True G45863
AMCG00013629 mRNA upstream 7360 38054897 ~ 38069645 (+) True AMCG00013629
AMCG00013625 mRNA upstream 23444 38051221 ~ 38053561 (+) True AMCG00013625
AMCG00013626 mRNA upstream 32455 38032609 ~ 38044550 (+) True AMCG00013626
AMCG00013627 mRNA upstream 65825 37998580 ~ 38011180 (+) True AMCG00013627
AMCG00013628 mRNA upstream 97868 37966650 ~ 37979137 (+) True AMCG00013628
AMCG00013631 mRNA downstream 30513 38118324 ~ 38121804 (+) True AMCG00013631
AMCG00013638 mRNA downstream 100563 38188374 ~ 38194330 (+) True AMCG00013638
AMCG00013640 mRNA downstream 258006 38345817 ~ 38353162 (+) True AMCG00013640
AMCG00013646 mRNA downstream 294658 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013647 mRNA downstream 363978 38451789 ~ 38458783 (+) True AMCG00013647
TU57084 other upstream 18171 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 756674 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 956434 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 1199402 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1338526 36736677 ~ 36738479 (+) True G45406
TU57149 other downstream 142755 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 282845 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 476687 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 731598 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1474162 39561973 ~ 39562300 (+) True G46244

Expression Profile