RNA id: AMCG00013638


Basic Information

Item Value
RNA id AMCG00013638
length 1285
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00013638
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38188374 ~ 38194330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTACAAAGCCTCCGTCAGTCCATCTGTCCAGCTCCTTGACACTGCGTCCATCTGTCCAGCGCCGACTCCATCTCTTTGTCCATCTGTCAGTGTGTCCGTGTGACTGTCTGTACCTCTCTGAGTGACCATGGCTTACTGCGCTCCTCCAGGTTACCAACCCCAATGCAACCCAACTGTGCCGTACCTGGGCCCATTGTGCCTGAGTCCAGGGATGTCTGTCTATATCCATGGAGTGATCCCTCATCATTGCAACAGGTTTGCGGTGGACCTGCAGTGCGGTGAGTTTGAGGGCACTGACATCGCTCTGCACTTCAACCCACGCTTTGAAGACTGGAATATGGTGGTGCTAAACACCTTCAGGAACGGGGCctgggaggaagaggagcagaCTGAACTGCCCTTCAGAAAGGGGGAGAGCTTCGAACTCATCATCATCGCCAGCGCTGAGGGCTACCAgatcaaCGTGAATGGCTCTCACTTCTACTTGTTCCGGCACAGGATGCCTCTGGAGAGAGTGAGCATGATCAGGATCCATGGAGACGTCACACTGGAGGCTCTCAACATCATCgggTGTGATATAGTCCCTCTTTCCTCCACAGGGGGGAATGGTTGTGTGTCCATCTCCCACTCTCTCAGTGGGTCTTTCTCAGGGAGGAGGAATGGTATACCAGAGCGGAAATCTaccgATCATGTGTGAAGCTCCAATCTATAATCCAGTTCCATCTGAACTTCATGGTGGGCAGCACACGTGACGTGGCATTCCACCTGAACCCACGCATATTGCAGGGCACAGTGGTGAGGAACAGCTACATGGGGGGGTGCTGGGGGAACGAGGAGACCGACCTGGACTACAACCCCTTCCAGGAGGGACAGTACTTTGagatctcGGTACGCTGTGGTAACTGGTGCTACAAGGTGTTTGTGAATGGTCAGCGTTTCTGTGAATTCACCCACCGGCTGCAGCCCTTCACACTGGTGGACACTCTGCAGATCGAGGAAGATGTACAGATCTCCTACATCCACTACTGACCCCGACACTCCACCCCTCATCCACCAGTCTTCCATCTTGCGGCCACACCGTCCTGAATGCATCCTGTTTAGATCTCGGAAGCTAAACAGGGCAGGGCCTGGTCAGTACTTGGATGGGAGACCTCCTGGAAATACCAGTCTCTCATCTGTCTGTATTCCCTCAGCcctttcaatctctctctctgtcttcacAAGAGGCACAGAGGGACAGCCAATGAAAATCCCCCACACAGTAGCCAACCTCTCCCTCCTAT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57100 lncRNA upstream 89843 38097990 ~ 38098531 (+) True G45812
TU57092 lncRNA upstream 114522 38073255 ~ 38073852 (+) True G45805
TU56996 lncRNA upstream 256176 37876383 ~ 37932198 (+) True G45737
TU56959 lncRNA upstream 366799 37818371 ~ 37821575 (+) True AMCG00013618
TU56957 lncRNA upstream 371801 37809891 ~ 37816573 (+) True AMCG00013616
TU57153 lncRNA downstream 16760 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 44209 38238539 ~ 38243152 (+) True G45860
TU57162 lncRNA downstream 51626 38245956 ~ 38246418 (+) True G45862
TU57163 lncRNA downstream 55697 38250027 ~ 38252663 (+) True G45863
TU57165 lncRNA downstream 159584 38353914 ~ 38354711 (+) True G45865
AMCG00013631 mRNA upstream 66570 38118324 ~ 38121804 (+) True AMCG00013631
AMCG00013630 mRNA upstream 100563 38077005 ~ 38087811 (+) True AMCG00013630
AMCG00013629 mRNA upstream 118729 38054897 ~ 38069645 (+) True AMCG00013629
AMCG00013625 mRNA upstream 134813 38051221 ~ 38053561 (+) True AMCG00013625
AMCG00013626 mRNA upstream 143824 38032609 ~ 38044550 (+) True AMCG00013626
AMCG00013640 mRNA downstream 151487 38345817 ~ 38353162 (+) True AMCG00013640
AMCG00013646 mRNA downstream 188139 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013647 mRNA downstream 257459 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013648 mRNA downstream 273202 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013649 mRNA downstream 282637 38476967 ~ 38478698 (+) True AMCG00013649
TU57084 other upstream 129540 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 868043 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1067803 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 1310771 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1449895 36736677 ~ 36738479 (+) True G45406
TU57149 other downstream 36236 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 176326 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 370168 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 625079 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1367643 39561973 ~ 39562300 (+) True G46244

Expression Profile