RNA id: AMCG00013640


Basic Information

Item Value
RNA id AMCG00013640
length 1797
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00013640
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38345817 ~ 38353162 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCTCCCCCACCCTTCCATCTCGCCCCCTTCtctcttccttctcctcctcctcccctcccatCTCTGCAGGAAGAGTCGTCAGGAGCTGAGTGGGGTGGCCCTGACGGGGGGTGGCGGGGGCGGGGGCATCCGGGGGGCAGGGGGCCGGGCGGTGCGAAGGAGAATGACCTGCCCCAGCCCCCAGGAGATCAGACATGCACTGAGCCCACATGGAGTGAGCCTGGACGAGCTCATCGAACGCTGTCTCAACTGCtttgACGGGGAGGGGCGGCTGCGCAGCAGTCAGCTGGTCAGCATGACTCTGATGATGCACTGCTGGTTGTGCATCCTTGACTATGTCACCTATCGGGACTGTCCTGTGGACAAGAGGAACTACATAAGACCAAGAATCTGCTACTTTATCAGGCAGTGGATCAGGCAGTACCCTGCAGTGTTTAACGGGGATGCCCATTTGGAAGAGGTGATGGAGGAGCTGGGGGAGCTGTCTTGCTGCAGGCGGCTGACCCTGGGGGAGGGCAGCGGGGGATTGAAGAAGCGGAAGGTGTCCCTGCTGTTTGACCACATGGAGCCGTGCGAGCTGGCCGAGCACCTCAGCTACCTGGAGTTCAAGAACTTCTGCCGTGTCTCCtaCCGGGATTACCAGAGCTATGTGCTGCGGGGCTCTGTGCGGGAGAACCCTGCGCTGGAGCGCTCAGTCACGCTGTGCAACGGTGTCTCTCATACTCTGATGGCGGTGATCGGGGGCCTGTGTCACAGTGCCATCTCCCGACTCAAGGACACCGCCAACCTGCTGCCCCCAGAGGTCACCAAGACTCTGAGTGAGCTGACGGAGCTGCTCTCCTCCTGCAGCAACTACAGCACGTACCGGCGGGTGTACAACGAGTGCCCCGGGTTCAAGGTGCCCATCCTGGGGGTGCACCTGAAGGACCTGGTGTCCCTGAATGAGGCGCTGCCCGACTACCTGGCGGACGGCAACATCAACCTGGCCAAGCTGCAGAGCCTGTACAGCAGCCTGTCTCTGGACCTGTTCTACACAGAGGATGAGATCTATGAGCTGTCCTATGCCAAGGAGCCCAGGAACCCCAAGATACAGTCCATTATGAAGAACTACGACCACAACCAGGACGGCTATATCTCCCAGGAGGACTTTAAGAAAATCGCAGACAGTTTCCCCTTCTActactgcacacagcacagcgaCAGggAGGGGGAGATGAGTCGAGAGGAGGTGCAGTCCTACTTCATGCGGGGGATGTCAGTGTGGGCCAAGCTGGGCTTCGACTTCCGCCACAGCTTCCACGAGACCACCTACAAGAAGCCCACCTTCTGTGACACCTGCGGCGGCTTTatgTGGGGTGTGATCAAACAGGGATACCGCTGCAGAGGCTCTGAGGAGGACAGCTTTGTGTTCCCACATGGCAACGAGGGGGCGGAGCTTGGTGAGGACACCAGCTTGGATGACCGGCTTTCGGACCGGTCCACTCAGACAGACCCAGGGGTGTGGACTCCGGGTCTGCATGACCGGGGGGGTGGTGGTATCCTCAGTCCTTATAGTCCAGGGTCTCCCCTCATCCTGCAGAGGACACACAAGAAGAACCTCTGCTCTTCTGGAACATACCGGGAAAGGTTCTGGAACAACGGTGTGATCCAGCCATGCTCcgaggGTTCCGCAGGGCCCAGAAATGTCTTTGCCGGGCCCAAGCTCAAGTCTTCCAACGAGAAcacaaatgttacaaaacacACCACCTTGGGTCCCCCTGGGCCACCCTCGGGCACCTGGGCCATGGGGTGA

Function

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57163 lncRNA upstream 93154 38250027 ~ 38252663 (+) True G45863
TU57162 lncRNA upstream 99399 38245956 ~ 38246418 (+) True G45862
TU57159 lncRNA upstream 102665 38238539 ~ 38243152 (+) True G45860
TU57153 lncRNA upstream 132931 38211090 ~ 38212886 (+) True G45854
TU57100 lncRNA upstream 247286 38097990 ~ 38098531 (+) True G45812
TU57165 lncRNA downstream 752 38353914 ~ 38354711 (+) True G45865
TU57257 lncRNA downstream 64403 38417565 ~ 38474315 (+) True G45941
TU57270 lncRNA downstream 116892 38470054 ~ 38472706 (+) True G45951
TU57326 lncRNA downstream 171550 38524712 ~ 38525412 (+) True G45990
TU57335 lncRNA downstream 183366 38536528 ~ 38537058 (+) True G45999
AMCG00013638 mRNA upstream 151487 38188374 ~ 38194330 (+) True AMCG00013638
AMCG00013631 mRNA upstream 224013 38118324 ~ 38121804 (+) True AMCG00013631
AMCG00013630 mRNA upstream 258006 38077005 ~ 38087811 (+) True AMCG00013630
AMCG00013629 mRNA upstream 276172 38054897 ~ 38069645 (+) True AMCG00013629
AMCG00013625 mRNA upstream 292256 38051221 ~ 38053561 (+) True AMCG00013625
AMCG00013646 mRNA downstream 29307 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013647 mRNA downstream 98627 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013648 mRNA downstream 114370 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013649 mRNA downstream 123805 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013655 mRNA downstream 193166 38546328 ~ 38550955 (+) True AMCG00013655
TU57149 other upstream 114487 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 286983 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1025486 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1225246 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 1468214 36874907 ~ 36877603 (+) True G45439
TU57196 other downstream 17494 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 211336 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 466247 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1208811 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1997490 40350652 ~ 40373160 (+) False G46345

Expression Profile