RNA id: AMCG00013646


Basic Information

Item Value
RNA id AMCG00013646
length 3475
RNA type mRNA
GC content 0.58
exon number 12
gene id AMCG00013646
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38382469 ~ 38398767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCATTCCTGCAACACTGTCTgagcaaggagagagagagagagagagagagactcactcataaagaaagaaagaaagaaagaaagagagagagagagagtgagtgagagagtgagagtgagtgagtgagtgagtgagtgagttgcAGGATCTGTAAATCAGTCGTTAGCAGCCGTGGATTGAGAAAGAAGACTCGGCGACATCTCGGTccctacacacagacacacacacgcctgGTTAGGGATCGtcagacagaaacacagccaTGAACCCAGTCCCCACAATGGACAGCAGCATGTTCCttCAGAGTCTCAGCAGTGAACTGGATGCCTCTCTGGCCACGGCAGACGAGCTGTCCAGGGAATTCAACAGCTTGTTTCAGCAGGCCTCCCCCATCAGCCAGCCCACTGGGCAGACCTGGGCCTCTTCTACCAATGCTTCCACCACCTCCGGCTCCGTCTACAGCTCTGGCTCTGCCTCCAGCTGGCAGTCCAACCCAGCCACCTCCCAGACTTTCTCCAGCCTGCCCAGCAGCAATGGGGATAGAGGCAAGGGCGGAtctggcagcagcagcagcagcagctatgAGACGGGCTCCCAGTCGCTGCCCTACATCTCCAGCTCTGAcggaggtggagggggagggggaggggggggcaacTCTCTCCGGTCTCAGGACAAGTACGCCCCCATTACCCCATCCCACCTTTACTCCCCCCATCAGCTCACACCCCCCCAGGCCAGGAGAGAGAGGATCTCCCCGTCCCTGACCCCCACCGCTGACTCCACCTACTCCTATGGTCAGCTGACCTCTCCCAACCAATCCCCTCGCTCCCAGAGACGCCCTTTTGCACCCAGCTCCCCCTCCCCGCACCTCTCCCAGGGCTCAGATTTCGACCAATCCCTGCGTCTGAAGCTTCAGAACCCCTCCTCCTCACTGAAGTCGGCTGTTCAATCCGGACACGGTTCCCCGGAGCTGGAGAGGATGTTCTCACCCCGGCCAATGAGGAACGAAGTGGACTCCACCTTTGACTACTCATCTCTCCCAATAAGGCGCCATGCCCCCACACCTTCCAAGGCTGCACAGTATGAGGTCAGTCAATTGTGGCATGGCGGGGGTGGGACCCTGGACAGGAACCCCTTCCCCAGGCCAATCGGCAGCAACCAGACCGCTTCCAACACCCTGCCAAGGAACTTTGGCTTCAGATCAGCTgAGTCGGAGTGGCACAGGCCCTCTGTGGCCCCTGCCAACTGGAGAGAATCCAACCTGGACAGCCCTACCCCAGCCCGGAGCAAGgAGGTGCAGTCTCGGGTGCTTCACACATtgccctcctcctcccactcCATCCCCAGGAACACACACATCTCCCTGGTTCCCTCCCCATCCCCCTCCCTGTCCTCCTCCCCCTACCCGCCCATCTCTCGCATCTCcatccccccctccaccccctggAAGCCCCTGAGAcgccccatccctctctccgtCATCATGCGGCTCCAGGGCCCGAGCTGGGCTGCAGCCAACACGGTTTACCCCCACGCCCCCCAGCTCTCCTggaacaaccccccccaccctccactcCTCCAGGACAACCGCCCACCCCCCAGCCCTGAGCAGCAGCCCCCGGAGCTCAGTACGGAAGTGTTGAGCCAGGGAGACAAGGTGGAGGCCGAATCGGTCAGAGACGGGGAGGGAGAGGCCGTAGAGGCGGTTCCTCGGCCCCTCAGCCCAACCCGTCTGCAGCCAGTTCTGGTTCCTATCAGTGAGGAGCTGCCGGACCGCCAGGAGCTGTTACGGATCCGGTCCGAGATCCCGCGGGCGTTGAAGAAGAGGGGCTCGGTGGACCAGTCGGGACCCCCCCAGAAGATGCCCCTGGTGTACCCAGAGCAGTACAAGCAGATCATCAGCAAGCTGTTCCGCAGGAATAAGACCCCCAAGAAGGAGGCCCCGGGCCGCGACGGCAAGTTGGAGCCCAGCTGTGACAGCAACAGCTCCTCCGAGAGCGAGGACATCCCACAGCAGGCCCCCACTTATGCCCCCGCAGCCCAAACGCTGCTGCCAGGACAGTCCCCCACTGCGCAGCTCGCACAGGAGGGCAAGGCTATGCGCTCTATTCTGAAGCGCAGTGGGGGTCGGTCCGGTTCCAGTCCAGAGAGGAAGGCCCGGCTCAGCCCGCTGGTACTGCTGCTGGACGGGGCACTGGTGGGGGAGCTGGACACGGTGCAGAGGGCAGTGCAAGAGATGAGCGACCCCAGCCAGCCCAATGACGAGGGCATCACGGCGCTACACAATGCCATCTGCGGGGGGCACTACCCAGTCGTTGAATTCCTGGTGCGAATTGGAGCCAACACCAGCGCCCCCGACAGCCATAACTGGACCCCGCTACACTGCGCCGCCTCCTGTAATGACCGCACCCTGTGCGAGTTCCTGGTGCGTAGCGGGGCGGCGGTGCTGGCCGTGACCCAGAGCGACGGTGCCACTGCAGCCCAGAAGTGCGACCCCTTCGCCCAGGGGTTCGAGGAATGCGAGAGCTTCCTCAGAGAGGGGGACATGGTGACCATACTGCACAAAGTGGAGGGAGAGGGCTGGTGGTGGGCCTCCTTGTGCGGCAGGGAGGGATACGTCCCCAACAACTACTTTgggCTCTTTCCGAAGGTTCGACCCAAATCCCTGTGCTAAAATAGAACCAGGAGCAGAACCAACCCACATCATCCCTGGACCTGTCAGAGCCGACCCGAACAGCACTGTGGCACTGGGACCATCACCAAACCAGAACGTTTCCACACTGATTACCAACGCACACTCATTCACACTTGCACACACTGACAGTAAGACTCCGACACGGTCACACGCAtccacactgacaaacacacccagacacagacagacgcatacacactctctctcacacacactcactcagacacccaactgtatatatgtatatataagaatTATTTTCAGTAAATACAGAGGTCCCGCTGTCCCTTACCCCTGCAGACAGAGCcctaaatgcacacacatgtatCCCCTTTTGCAAACTGAGCTCCCCCCATCCCTCAACACTGAGAGGCAGTATGGTCTACGGACACAACACCAGGCAGGCGACAGGAGCATGCTGTTTCACCCGCTGATACTCTCACAGATGGTTGGCATGTTTCCATTCCTTTCactgggagggagggggacACTGTTCAGGAAAGGAACAAATTAAGTTCTGTAAATACTCGCAAAAAGtcgtacattttttttttcttgaatgttgttatttttattttatgatcttGATTGAGACTGACACTTGGTGATGccttttgctgttgtttctttttcattactaataattatttctgtgtttgttacAGAGAAGTGACTAGTTTAGCAGTGCTaagggtgggggtgtgtgtctgtgagtgtgtgagtccATGTGTGTGTCcacatttgtgtatatatgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57165 lncRNA upstream 27758 38353914 ~ 38354711 (+) True G45865
TU57163 lncRNA upstream 129806 38250027 ~ 38252663 (+) True G45863
TU57162 lncRNA upstream 136051 38245956 ~ 38246418 (+) True G45862
TU57159 lncRNA upstream 139317 38238539 ~ 38243152 (+) True G45860
TU57153 lncRNA upstream 169583 38211090 ~ 38212886 (+) True G45854
TU57257 lncRNA downstream 18798 38417565 ~ 38474315 (+) True G45941
TU57270 lncRNA downstream 71287 38470054 ~ 38472706 (+) True G45951
TU57326 lncRNA downstream 125945 38524712 ~ 38525412 (+) True G45990
TU57335 lncRNA downstream 137761 38536528 ~ 38537058 (+) True G45999
TU57358 lncRNA downstream 167882 38566649 ~ 38567319 (+) True G46016
AMCG00013640 mRNA upstream 29307 38345817 ~ 38353162 (+) True AMCG00013640
AMCG00013638 mRNA upstream 188139 38188374 ~ 38194330 (+) True AMCG00013638
AMCG00013631 mRNA upstream 260665 38118324 ~ 38121804 (+) True AMCG00013631
AMCG00013630 mRNA upstream 294658 38077005 ~ 38087811 (+) True AMCG00013630
AMCG00013629 mRNA upstream 312824 38054897 ~ 38069645 (+) True AMCG00013629
AMCG00013647 mRNA downstream 53022 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013648 mRNA downstream 68765 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013649 mRNA downstream 78200 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013655 mRNA downstream 147561 38546328 ~ 38550955 (+) True AMCG00013655
AMCG00013654 mRNA downstream 165722 38564489 ~ 38566281 (+) True AMCG00013654
TU57196 other upstream 9271 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 151139 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 323635 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1062138 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1261898 37113502 ~ 37120571 (+) False AMCG00013587
TU57357 other downstream 165731 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 420642 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1163206 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1951885 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 4029334 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile