RNA id: AMCG00013648


Basic Information

Item Value
RNA id AMCG00013648
length 1365
RNA type mRNA
GC content 0.64
exon number 1
gene id AMCG00013648
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38467532 ~ 38468896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGACTGACTAAGCATGTGGTGCTGCTCCTCCTGGGGGCCGGTGTGCTGCTGTTGCTGAACTTCTCCTCCCTGCTCAGGCTGCCCCACCCCACTCTGCTGGTCTGGAGGGGCAGCCCTGCACAGGAGCAGGAACACGCAAAGGGGAAAACGCCACCGAGAACCCACTTGAAAAACACAACGCGGCCGCCGTCCACGTCCCCGCCCCCCCCAGGGCCCCCAACCGCTCTCCCCGTCTATGTCTCCAAGGAGCTCCGCAAACTGGTCCCTCAGAGCAATGCCTACTGGAACCGCCAGGTCCACAGCGCTCTTACAGCCCTGGAGCAGCTGACCACCTCATCCCCCGGCTCCCCACACACCAGCCAGGACCCGGACCACCCCCACTGCCAGCCAGTGCCGCTGCAGACCCTGCGTGGCCAGATCCAGGACTTCGACTCGTACTCGCCGCTGTACAAGGACTTGCTGCAGGGGGCACACTGCCACGACTACCCCCTGCTCATCGATCAGCCGGGGAAGTGCGGGGGCCCCACCGAAACTCCGACTGGAGCTCAAACTGGAAACCAGAGCTCCCCCATGAAGGACACCACCGAGCCTGAGCACGgacccttcctcctcctcgccATCAAGTCTGTCCCGCACAACTTCCAGCAGCGGCAAGCTGTGAGACAGACTTGGGGCTGGGAGGGGCGGCACTGGGGCGACCTGGAGGTGCGCACCGTGTTCCTGCTGGGCTCCTCCGCCGCCACAGATGAGCCTGACCTGGGGGTACTGCTGGCGGCGGAGGCGGGGCGGTATGGGGACATCTTGCAGTGGGACTTCAGGGACTCCTTCTTCAACCTGACGCTGAAAGACGGGCTGTTCCTGCGCTGGGCCGAGCGCCACTGCCCCCGCGCACGCTTCGTGTTCAAGGGCGACGACGACGTGTTCGCCAACACCTTTCAGATGCTCAAATACCTGCAGCGCGTGGGGGATGCCAAGTTGTACACCGGGCAAATCGTGGAGCAGGCCAGTCCTTTCCGGGACGCCAAGAACAAGTACTACATCCCGCACTCCTACTACGACGGTGTGTACCCTCCCTACGCTGGGGGGGGCGGCTTCCTGTTCTCGGGCTCCCTGCTGCGCCCGCTCTCGCTGCTCTCCCGCCTGCTGCCGCCTTTCCCCATCGACGATGTCTTCACGGGCATTTGCATGCAGGCGCTGCATGTGGTCCCCACCTCCCACTCCGGCTTCCGGACCTTTGATATCATGGAACGCGACCGTGAAGATGCCTGCATCCACCGCGACCTGCTGGTGGTGCACCACCGCACcccccagcagacactgcggctcTGGAGGAGAATCCAGGACACCAGCCTCCAATGCTGA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57165 lncRNA upstream 112821 38353914 ~ 38354711 (+) True G45865
TU57163 lncRNA upstream 214869 38250027 ~ 38252663 (+) True G45863
TU57162 lncRNA upstream 221114 38245956 ~ 38246418 (+) True G45862
TU57159 lncRNA upstream 224380 38238539 ~ 38243152 (+) True G45860
TU57153 lncRNA upstream 254646 38211090 ~ 38212886 (+) True G45854
TU57270 lncRNA downstream 1158 38470054 ~ 38472706 (+) True G45951
TU57326 lncRNA downstream 55816 38524712 ~ 38525412 (+) True G45990
TU57335 lncRNA downstream 67632 38536528 ~ 38537058 (+) True G45999
TU57358 lncRNA downstream 97753 38566649 ~ 38567319 (+) True G46016
TU57380 lncRNA downstream 119983 38588879 ~ 38590159 (+) True G46034
AMCG00013647 mRNA upstream 8749 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013646 mRNA upstream 68765 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013640 mRNA upstream 114370 38345817 ~ 38353162 (+) True AMCG00013640
AMCG00013638 mRNA upstream 273202 38188374 ~ 38194330 (+) True AMCG00013638
AMCG00013631 mRNA upstream 345728 38118324 ~ 38121804 (+) True AMCG00013631
AMCG00013649 mRNA downstream 8071 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013655 mRNA downstream 77432 38546328 ~ 38550955 (+) True AMCG00013655
AMCG00013654 mRNA downstream 95593 38564489 ~ 38566281 (+) True AMCG00013654
AMCG00013656 mRNA downstream 109367 38578263 ~ 38580971 (+) True AMCG00013656
AMCG00013671 mRNA downstream 139154 38608050 ~ 38612189 (+) True AMCG00013671
TU57196 other upstream 94334 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 236202 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 408698 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1147201 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1346961 37113502 ~ 37120571 (+) False AMCG00013587
TU57357 other downstream 95602 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 350513 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1093077 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1881756 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3959205 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile