RNA id: TU57357


Basic Information

Item Value
RNA id TU57357
length 225
RNA type TUCP
GC content 0.57
exon number 3
gene id AMCG00013654
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38564489 ~ 38566281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCAGTACATCTGCATGCTCTATGGTCTGACTTCCAGAAACACCTGGATCAGCTTCGGGGGATCCTACGCTGGCAGCCTGTCCGCGTGGCTGAGGGGCAAGTTCCCTCACCTAATCTACGGTGCTGTGGCCTCCTCAgccccagtcaaagcccagctGAACTTCACTGAGTACAACAAGGTTGTGGCCAAGAGCCTCAGCAACCCTGTGGTGGGAGGATCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57335 lncRNA upstream 27440 38536528 ~ 38537058 (+) True G45999
TU57326 lncRNA upstream 39086 38524712 ~ 38525412 (+) True G45990
TU57257 lncRNA upstream 90183 38417565 ~ 38474315 (+) True G45941
TU57270 lncRNA upstream 91792 38470054 ~ 38472706 (+) True G45951
TU57165 lncRNA upstream 209787 38353914 ~ 38354711 (+) True G45865
TU57358 lncRNA downstream 1655 38566649 ~ 38567319 (+) True G46016
TU57380 lncRNA downstream 23885 38588879 ~ 38590159 (+) True G46034
TU57381 lncRNA downstream 25761 38590755 ~ 38621343 (+) True G46035
TU57394 lncRNA downstream 80284 38645278 ~ 38673471 (+) False AMCG00013665
TU57375 lncRNA downstream 91602 38656596 ~ 38699232 (+) False AMCG00013672
AMCG00013655 mRNA upstream 13543 38546328 ~ 38550955 (+) True AMCG00013655
AMCG00013649 mRNA upstream 85800 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013648 mRNA upstream 95602 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013647 mRNA upstream 105715 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013646 mRNA upstream 165731 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013656 mRNA downstream 13269 38578263 ~ 38580971 (+) True AMCG00013656
AMCG00013671 mRNA downstream 43056 38608050 ~ 38612189 (+) True AMCG00013671
AMCG00013665 mRNA downstream 86940 38651934 ~ 38672626 (+) True AMCG00013665
AMCG00013664 mRNA downstream 118005 38682999 ~ 38687808 (+) True AMCG00013664
AMCG00013672 mRNA downstream 132386 38697380 ~ 38707354 (+) True AMCG00013672
TU57196 other upstream 191300 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 333168 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 505664 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1244167 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1443927 37113502 ~ 37120571 (+) False AMCG00013587
TU57427 other downstream 254415 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 996979 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1785658 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3863107 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3863107 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile