RNA id: AMCG00013656


Basic Information

Item Value
RNA id AMCG00013656
length 1749
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00013656
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38578263 ~ 38580971 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacaacttttttcttctcctctctcctatacgattttcaaatcaaaagacagtCCCACTcagccacacaacacacacccattCACCGAGCGACCGGGCCGGGAGGAGCGCAGATCTGGCGGCGCCTCCggagaaggagacacagagagtgagagacacagGGCTCAACAGAGCAAGAGAGACCAGGAGAaggcaagggagagagagaggcagaatgagaaagaaaaagagagggagagtgagaaggAAAAGGAGAGGCAGAAGATGAGAGAGcggcagaagagagagagagacctgctCAGAGCCAGGAGGAGAGTCCTGTACCCAGTTCTGCCTGCCACCTTCTGCCCCACTCAGCCCACGCCCATCTCCCACCCCAGCCCCCATCCCCAGCAAGTTAAACCAGCTCCCATGGCCCCCCTAGGACCCAGCCAACCCCAGCCAACAACCCCCCCAACTCTACAAACTGACCCCAGACTGCAACTGCAAAACTGTCTCTTCCCCCCCATCCCACAAACAGCCCTGCCACACAACCTGTGGCCATCAGGGGGAGCGAGAGCCCCACTGCCACAGCAGATAGGGAGGCAAGATGTCAGCTCTGAGGCAGGTGGGGGGGCCGACAGCACTGTAGCTCTCCTTCAAACGCCCATGCCCATGCCCCCATGCGGCCCTGAACCTGCCACCCCCCATGCGCAGGCCTGGAGCGCACAGTGCCAATATTCACCGCAGAGACTGCAGTTGCTGCAACAGCGGAGTATGTCCGAACAAATCTCTCGCAGACAGAATCTGTCAGTCTTGCAGTATGCCATGCCAAAAGCCAATGTGATGAAAGTGTATAAATACCAGACACCCTGTCCAGGGGTAGCCAAGGACATCATCACAGTAACCCCCAAGGCAACCTTCCAGGAAACCAGAATGGAACCCAGCATTACAAACAACTCTGCAACAATTTCAGAGAACGATCAAGTACCTGTCCCTGCAGGTAACAAGCACCCGCCCAGCCCAGCCCTCACCGGCTCCCACTGTGTTCCTGCGCTGTGTGAGGCAGACGGCAGCACCTGCCCAGCTCCTGTTGCGATGCTCCCGAGGGCCCAGCTGGACCAAGCGCAGAGTGAAAGCACACACGAGAAGAAAGATGAGAGGCGTGAGAGacaggaggtggaggaggaggaggaggaggaagagatgcCCCCCCCCGGTCATTGCTGCCCACCATTCCACATCGACCACACCTGCACCCGCTGCTCCCGCTGCCAACACCGCACCGAAGCAGCACCACTACCCAGGAACGTCACCCAGTGgttGTCTGTGAGGCACAACATCCTGTGTGAGCCAGCTTGGGTCACCACGATCAAACTGGCCGCCTCCATGGCAGTCAGAGAAGGGCTGGGAGGCGAGGACAACATCATAGAGCAGTAGCTACAGCAACTACCTGCACCATCCAACGAAAGCCCAGCACTTCCAAAACTATGCTCCAACCATCGGAGAATTACATCCCTGCACACACAAACTCTAGATCTGATATTAAACTTCAACTGatttcatacaaattaaaatccaatgACCTTTTCAACACAGCACACTacaatcaacttttttttttaatcttcaacaTCACTGAAGAAATTAGAAAATTGTATCTTGAATTAAATGTCTTCAGATTAGTataggaataaatacataaataccacATAACATCTCTGTAACTcacctaatgtttttttatattctgtacTGCCTACTTCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57358 lncRNA upstream 10944 38566649 ~ 38567319 (+) True G46016
TU57335 lncRNA upstream 41205 38536528 ~ 38537058 (+) True G45999
TU57326 lncRNA upstream 52851 38524712 ~ 38525412 (+) True G45990
TU57257 lncRNA upstream 103948 38417565 ~ 38474315 (+) True G45941
TU57270 lncRNA upstream 105557 38470054 ~ 38472706 (+) True G45951
TU57380 lncRNA downstream 7908 38588879 ~ 38590159 (+) True G46034
TU57381 lncRNA downstream 9784 38590755 ~ 38621343 (+) True G46035
TU57394 lncRNA downstream 64307 38645278 ~ 38673471 (+) False AMCG00013665
TU57375 lncRNA downstream 75625 38656596 ~ 38699232 (+) False AMCG00013672
TU57522 lncRNA downstream 353492 38934463 ~ 38939511 (+) True G46138
AMCG00013654 mRNA upstream 11982 38564489 ~ 38566281 (+) True AMCG00013654
AMCG00013655 mRNA upstream 27308 38546328 ~ 38550955 (+) True AMCG00013655
AMCG00013649 mRNA upstream 99565 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013648 mRNA upstream 109367 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013647 mRNA upstream 119480 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013671 mRNA downstream 27079 38608050 ~ 38612189 (+) True AMCG00013671
AMCG00013665 mRNA downstream 70963 38651934 ~ 38672626 (+) True AMCG00013665
AMCG00013664 mRNA downstream 102028 38682999 ~ 38687808 (+) True AMCG00013664
AMCG00013672 mRNA downstream 116409 38697380 ~ 38707354 (+) True AMCG00013672
AMCG00013678 mRNA downstream 129004 38709975 ~ 38722908 (+) True AMCG00013678
TU57357 other upstream 13269 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 205065 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 346933 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 519429 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1257932 37315486 ~ 37320331 (+) False AMCG00013595
TU57427 other downstream 238438 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 981002 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1769681 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3847130 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3847130 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile