RNA id: AMCG00013671


Basic Information

Item Value
RNA id AMCG00013671
length 531
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00013671
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38608050 ~ 38612189 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGATCGGCGGAAGCTGCCCATGACGGAGGCGGTGCTAAGCGAGACTCAGAGACTGCTGGACTTGGTACCTCTCAGTGTGCCTCACATGGCTACCCAAGACATCGCCTTCAGGGGCTACTGCATCCCACAGGCGCCTCACACCTGTACACCCTCTTACCTGTCCCCAAGCCCCTCTCACCTGTCCCCAAGGTCCGCTCACAGTGCGCAGGATGGTACCAAAGAGGCCCAGCAGCCGCAGGAAGCAGGTGTCCTGTTCGTTGAAACGCTGGCCAAACACCAGCGCACACACCACATTGGACACGGAGCTGCGCAGCAGGGTGGCGGGGTCAAATATGGTGCCTGGGGGGACAAAGAcactgagagaTGTGTGTCGCTCAGCGCAGTGACCAGATGCCTGCTCTCCTGCACGATCCACTCCTCCATCCTCTTCCTGCCCATCCCAAAGTCCCGCAAGCAGGTCAGCGTGAAGCGACGCAGCTGCTGCCAACGTGGACCATTACTGATCAGCAGCCCTGTGGAGGGGTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57380 lncRNA upstream 17891 38588879 ~ 38590159 (+) True G46034
TU57358 lncRNA upstream 40731 38566649 ~ 38567319 (+) True G46016
TU57335 lncRNA upstream 70992 38536528 ~ 38537058 (+) True G45999
TU57326 lncRNA upstream 82638 38524712 ~ 38525412 (+) True G45990
TU57257 lncRNA upstream 133735 38417565 ~ 38474315 (+) True G45941
TU57394 lncRNA downstream 33089 38645278 ~ 38673471 (+) False AMCG00013665
TU57375 lncRNA downstream 44407 38656596 ~ 38699232 (+) False AMCG00013672
TU57522 lncRNA downstream 322274 38934463 ~ 38939511 (+) True G46138
TU57779 lncRNA downstream 1754277 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1773845 40386034 ~ 40389941 (+) True AMCG00013729
AMCG00013656 mRNA upstream 27079 38578263 ~ 38580971 (+) True AMCG00013656
AMCG00013654 mRNA upstream 41769 38564489 ~ 38566281 (+) True AMCG00013654
AMCG00013655 mRNA upstream 57095 38546328 ~ 38550955 (+) True AMCG00013655
AMCG00013649 mRNA upstream 129352 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013648 mRNA upstream 139154 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013665 mRNA downstream 39745 38651934 ~ 38672626 (+) True AMCG00013665
AMCG00013664 mRNA downstream 70810 38682999 ~ 38687808 (+) True AMCG00013664
AMCG00013672 mRNA downstream 85191 38697380 ~ 38707354 (+) True AMCG00013672
AMCG00013678 mRNA downstream 97786 38709975 ~ 38722908 (+) True AMCG00013678
AMCG00013673 mRNA downstream 126045 38738234 ~ 38741039 (+) True AMCG00013673
TU57357 other upstream 43056 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 234852 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 376720 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 549216 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1287719 37315486 ~ 37320331 (+) False AMCG00013595
TU57427 other downstream 207220 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 949784 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1738463 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3815912 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3815912 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile