RNA id: AMCG00013673


Basic Information

Item Value
RNA id AMCG00013673
length 2077
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00013673
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38738234 ~ 38741039 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCCCAGCGGTGGAGAAAACACCTAATTGTACATCGATAGGAACTGTCGAACAGAAATCGAAACCAGTCGGATTGATCGATTCGGGGGATTCTGGCGCCCCGAGGATGAGGAGGGAGCTTGAAGAGGAAGAGACGGAGCAACAGTGCCCGAGAACGAGCTGCAACCCGCCGCCTTGCCTGCACACTGCGAACTGAAGCCGCCGTTACCTTCACCCCACAATGGCCGGGATACAGCGACAGCACCCGGAGACGGGCCCCACGACCCCGGCCGAGTTCGGGTTTGGGCTCAGCAAGCCGCTGTGCCAGGAGGCGGGGGAATGGTGCGACAGCGGGCTCGATTCGCTCGGCCCGCCTGGGTTCGGCGACGCCGAGCTGCACTGCGAGTGGAAGACGGCCCCCCCCTCTGTGGATCGCGACCCGGCTCGCCCCGGCCCAGACCCCGCTGCTGACACCTGCGCCTCTCTCGGTGGAGACCGGCTGGACTCGGCGCTGGGAGACTCCATCACAGAGGAGCTGCTGAGCAGTATCTCCCTGGGGCTCGGTACTATGGACCTGGCCGCGGGGGAGGGCGGAGACACGGCAGGTACCAGCTCAGCCGAACCGGATCCAGCCCAGGAGCAGCTGGCCAGGGATGAGCTGTTCAAGACGATGACGTTTATCTCGGAGGATGGAGACACggCTCTCCACCTGGCTCTGATCCATGAGCACTGGCCATTCCTGCAGTACCTGTTGAGTGTGGTGTCTCTGAACTCTGCCTGGACGTGCTACCTGGATATCCAGAACCACCTGCACCagACCGCCCTGCACATTGCTGTGATCGTGAACCGCTGGGAGTGTGTGCACAGGCTGCTGTGTGCCGGCGCGAATCCCGAGCTGCAGGAACGGGGGGGCAACACCGCCCTGCACATCGCCTGCCGGGAGGGCCGGGTGGAGTGCGTGCGGGCGCTCGTGGCAATCGGTGGCAACCGCGCACAGCTGCACGTCACCAACTACACAGgagtgACGGCACTGCACCTCGCAGTACAGAGGGGAGACGAGGAGATCGTCAGGCTGCTGCTGGACGCTGGAGTCAATGTCAACCAGAGCgaccagggctccGGCCACACTCCCCTGCACTGGGCTGTGGAGAAGCAGAACCCCACGCTGGTGCAGCTCCTGCTGAGCCGGGGGGCGGTGGTCAATGCCCCCACCTACGCCGGGCACACCCCGCTGCAGTTCGCCCTCTACAGGCCCAACACAGAGGTGCGGCGGCTGCTCCGGGCCGGGGGAGCCGCCGAGccacaggaggaggaggacgaggaggaggatgaggaggaggagattgAGAGCGAAGAGGAGTTTGACGACCTGACCATCAATGGCCATCGTGTGCTGTAATCACAGATGTTGATATGGAGCCAAGCCCCTGAACCTGTGACTGCCAGGAGTCCTTCTGTGTAaccatgtcagtgtgtgtgtgtacgtgtgtatgtgtgtacgtgtgtacatgtgtgtggcTTTCCTGGGCTCTTCGAACTCTGGTTGCTGATTAGCGGGGCAGTCCTGCTCTAAAGAGGGTAATACCATTGCACTGAGATGAGAGGGGTGGCCTCTAGATGTATTCATTTGAACAAAGCTGTTGTACTGCGCCGGTGCGGAGGGGCTGTGCAGTGCACCCACTGTAATTTATTGTCAGTTGTTACgtatttgagttttattttttccgaTCCTTTCTCCTTTCTCAGTGCAGCTTCTCAATCCGGAGAGTCGGGGCAGAGCTTCACGGTCACTTTCTTCCTCCTCCGTTCAATTAATTTCTTTCTAAtcctaaaaatatattattacttttctttattttaactttcTATTTTCAGTTAATCAGTTCTGTTTACAAATTATTACATCAAGTTGGGGGAACCTGTATACTCATTTTGAGAGTTTAAAAAagtgagagagggatgagagATGGATGGAGAGAAACAATTAGAAGAGTTGACAGGAAGAGAGGGAGTTGGGATGTGAGAGAGTCAGTTTTTCTctgcatttcacttttaaatattaaaataaataaatttacaCCCATATATCAACACAGAA

Function

GO: NA

KEGG:

id description
K02581 NFKBIB; NF-kappa-B inhibitor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57375 lncRNA upstream 39002 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 64763 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 116891 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 148075 38588879 ~ 38590159 (+) True G46034
TU57358 lncRNA upstream 170915 38566649 ~ 38567319 (+) True G46016
TU57522 lncRNA downstream 193424 38934463 ~ 38939511 (+) True G46138
TU57779 lncRNA downstream 1625427 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1644995 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 1650849 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 1675593 40416632 ~ 40425507 (+) True G46360
AMCG00013678 mRNA upstream 15326 38709975 ~ 38722908 (+) True AMCG00013678
AMCG00013672 mRNA upstream 30880 38697380 ~ 38707354 (+) True AMCG00013672
AMCG00013664 mRNA upstream 50426 38682999 ~ 38687808 (+) True AMCG00013664
AMCG00013665 mRNA upstream 65608 38651934 ~ 38672626 (+) True AMCG00013665
AMCG00013671 mRNA upstream 126045 38608050 ~ 38612189 (+) True AMCG00013671
AMCG00013674 mRNA downstream 6076 38747115 ~ 38748838 (+) True AMCG00013674
AMCG00013679 mRNA downstream 23949 38764988 ~ 38767626 (+) True AMCG00013679
AMCG00013682 mRNA downstream 49836 38790875 ~ 38797831 (+) True AMCG00013682
AMCG00013681 mRNA downstream 70906 38811945 ~ 38821954 (+) True AMCG00013681
AMCG00013680 mRNA downstream 85543 38826582 ~ 38829568 (+) True AMCG00013680
TU57357 other upstream 173240 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 365036 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 506904 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 679400 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1417903 37315486 ~ 37320331 (+) False AMCG00013595
TU57427 other downstream 78370 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 820934 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1609613 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3687062 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3687062 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile