RNA id: AMCG00013674


Basic Information

Item Value
RNA id AMCG00013674
length 504
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00013674
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38747115 ~ 38748838 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGACGGCTACTGGACCGCTTCACCTCCTACCGCATCATGAGCCACCTGCAGCACAGCATGGCAGATGACCGTATCTGCAGCCCCCCCTACCTGGAGCTCAGCGCTGGAGAGCCGGGGGAGATCAGGGATGCTGTGGCACGGCACCAGCTCAGCTTCCCCCTGAACAGAAAGACCATCTTCTTCAACAGCCGTGAGGTGTCCAAGCCAGAGTCCTGCTCTAACCTCACAGCGCTGGACGAGGAGGtggctccccccacccccccgagtGACGCAGTGCTGGGTGCCATGGTGGCGGAGCTGAGGACAGAGCTGGGCATGGCTCTGTTTGGGGTGGACGTGATCGTGGACAACAAGACGCAGAGACTCACCATCATCGACATCAATATTTTCCCCGgGTATGAAGGTGTGAATCAGTTTTTCTCCGCTCTCCTCAGTCATATTGAGACTCTTCTGGGGGCGACAGGGGGAGAGTCCTGTGAAGCCAGGGACTCGCCTGAGTGA

Function

GO:

id name namespace
GO:0032957 inositol trisphosphate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity molecular_function
GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity molecular_function
GO:0047325 inositol tetrakisphosphate 1-kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57375 lncRNA upstream 47883 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 73644 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 125772 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 156956 38588879 ~ 38590159 (+) True G46034
TU57358 lncRNA upstream 179796 38566649 ~ 38567319 (+) True G46016
TU57522 lncRNA downstream 185625 38934463 ~ 38939511 (+) True G46138
TU57779 lncRNA downstream 1617628 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1637196 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 1643050 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 1667794 40416632 ~ 40425507 (+) True G46360
AMCG00013673 mRNA upstream 6076 38738234 ~ 38741039 (+) True AMCG00013673
AMCG00013678 mRNA upstream 24207 38709975 ~ 38722908 (+) True AMCG00013678
AMCG00013672 mRNA upstream 39761 38697380 ~ 38707354 (+) True AMCG00013672
AMCG00013664 mRNA upstream 59307 38682999 ~ 38687808 (+) True AMCG00013664
AMCG00013665 mRNA upstream 74489 38651934 ~ 38672626 (+) True AMCG00013665
AMCG00013679 mRNA downstream 16150 38764988 ~ 38767626 (+) True AMCG00013679
AMCG00013682 mRNA downstream 42037 38790875 ~ 38797831 (+) True AMCG00013682
AMCG00013681 mRNA downstream 63107 38811945 ~ 38821954 (+) True AMCG00013681
AMCG00013680 mRNA downstream 77744 38826582 ~ 38829568 (+) True AMCG00013680
AMCG00013683 mRNA downstream 82517 38831355 ~ 38844099 (+) True AMCG00013683
TU57357 other upstream 182121 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 373917 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 515785 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 688281 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1426784 37315486 ~ 37320331 (+) False AMCG00013595
TU57427 other downstream 70571 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 813135 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1601814 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3679263 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3679263 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile