RNA id: TU57427



Basic Information


Item Value
RNA id TU57427
length 1203
RNA type TUCP
GC content 0.40
exon number 2
gene id AMCG00013681
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38811945 ~ 38821954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCTGTTTCCTTTTACACAGTGTGAAACAGGAACTGTGCCGTTGACAGCTCAGTCtaccaatatttttttaattattacaacaATCTGTTTCCAGTCCCACTGGTCCAGTTTATAGATATTCAGATTTCCCGactaagagagaaaaaagtgacAGATGCCTTTTGTTGGAAGTGACATATTGAAATCCTTCAGTGGTCTGTTAATTCCTCTTTGTGGCACAGGTTAGTGGGGTCAGTTCAATGCTTCCTCTTTCTGTTACAGAACAGAGCTAACATGACATATGAAAAGATGTCCAGAGCGCTTCGGCATTACTACAAACTCAACATCATCAAGAAAGAGCCGGGACAGAAACTACTTTTCCGGTTTCTCAAAACCCCAGAGGAGATCCTACAGAACCGCACTGACCGTGTGGAGCAGGCAGACTCCCCAGAGCAGCACTCCCCCGAGTACAGAGAGGAGGGTCTGGAGGTATCCCCTGAGCCGCCCATCAGCTCCCCATCCCCCATAAGCTCCTAACAAAAATTGTCACAACCTCTCTGCACTGTGGACAGCCTCAGGCCCCCACCTCCAGCACCACTACAGCTCAGAAGGCCTGCAGCACAAAGACATACATAAATACGTGAAtcacataaaaatgtatcaggCAGgaacaaatgaacaaattaatcaataaatacatttgacaggATTCTCCAAAATGCATAGGATTCAACAGAGCTACTGTTACTGTGAAACATTAATggtacaaataattacattttataatggtACAAAATCAGGATATTCAATATAACTTTAACCAGGGCTCTACATATACACACCAAAAGGTAGACCGTTAACTACTAAAAAGACACTAAAGCAGGCTTTAAATTGCAAGATATCTTTCAGAAATACAAGTCAGAAATACTCTCATTATCTCTGGAAAATGTACCGACAAAAGATTACTTCAGAGCAGTTTTTAAAGTTCTTTTTAACATGCAcatcattttttgtaagattAGCAAGAATTTCTGGTATCCTTGTGAATCAAACATCGACTTTGTCCTCAGAGAATCAAATGCACTGTTCTCAGGCGTGAGTGCCTATACATAATGTTGTgtcccctttttgttttttttgtggatctgtaaatatattgttttgtttttttataaactgaGCCTTTTTGTCTACAGCTGGAATAAAATTTTGTAGAAAGCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57375 lncRNA upstream 120177 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 145938 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 198066 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 229250 38588879 ~ 38590159 (+) True G46034
TU57358 lncRNA upstream 252090 38566649 ~ 38567319 (+) True G46016
TU57522 lncRNA downstream 112510 38934463 ~ 38939511 (+) True G46138
TU57779 lncRNA downstream 1544513 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1564081 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 1569935 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 1594679 40416632 ~ 40425507 (+) True G46360
AMCG00013682 mRNA upstream 21578 38790875 ~ 38797831 (+) True AMCG00013682
AMCG00013679 mRNA upstream 51783 38764988 ~ 38767626 (+) True AMCG00013679
AMCG00013674 mRNA upstream 70571 38747115 ~ 38748838 (+) True AMCG00013674
AMCG00013673 mRNA upstream 78370 38738234 ~ 38741039 (+) True AMCG00013673
AMCG00013678 mRNA upstream 96501 38709975 ~ 38722908 (+) True AMCG00013678
AMCG00013680 mRNA downstream 4629 38826582 ~ 38829568 (+) True AMCG00013680
AMCG00013683 mRNA downstream 9402 38831355 ~ 38844099 (+) True AMCG00013683
AMCG00013692 mRNA downstream 294660 39116613 ~ 39125103 (+) True AMCG00013692
AMCG00013694 mRNA downstream 348957 39170910 ~ 39177969 (+) True AMCG00013694
AMCG00013695 mRNA downstream 389436 39211389 ~ 39225998 (+) True AMCG00013695
TU57357 other upstream 254415 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 446211 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 588079 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 760575 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1499078 37315486 ~ 37320331 (+) False AMCG00013595
TU57658 other downstream 740020 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1528699 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3606148 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3606148 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 3606148 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile