RNA id: AMCG00013682



Basic Information


Item Value
RNA id AMCG00013682
length 1053
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00013682
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38790875 ~ 38797831 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTTGCAACAAGCATGAAACTAGCAAGGCTCACGCCATAGCTGTCAGCAAGTATAGTGGCTACAAACACACCCTTGAGTTTGATAGAGGAACTGTGCTCCACCAGTTAAATTCAGAAACAATAAATTCAAAAAGAATAGAAATGAATCAGGAGCATATTAAAGTTGTATTGGATCTCGTGATGCTGTGTGCTAAACAGGAGATCGCTCTTCGAGGACATCGGGAAAATGAAGATGCGCATAACAGGAGCAATTTCTGGGAGTTATTTAAACTGTTGTGCAAATATGATCCAGAGATTCAAAGTAGGATTGATGCGATCCTTAAAAACGCCACAATGACCAAccatgaaacacaaaatgatttCCTTGATTCTGCAGCAACTCTCTTGCTGCACACAATAAATAAGCAGCTGCACAAGAAGAAGGACACCTACTTTGCTATCCTAGCTGATGACTTTGACGGGGCGTCAGTCAGGTCTGGGCATAAGGGGGGAGTTCAAGCCATCCATCCAAGACGCAAATTCATTAATGCCATGTACGTCCACTGTCACTCGCATCGCTTAAACCTGGCGCTATCAGCCATGGCACGGACGTCAGCTGACGCTGCCACTTTTTTTGACACTCTGAACTTGCTATACGCGTACATGAATGGGGCTCAGCGACACGCCCGGTTCCTGGAGCTACAGAAAGAGATGCATTCTGATTGCAGGCCACTTCAACTTGAACGGGGATCTGACACAAGGTGGAGCTCAAGGCAGGGGCATCGCCACCACATCGCCTCTGATGAGCGTGACCTTCCCAGAAGCAATGTGCTTCTTCACCGCCTGGCTGGCCTTGCTGACCATATACTCAGAGTAGTCCACTCCAATCAGCTTGCCCTTGGGGCCGGTGAGGAGAGGGGCAGCTGCCCGGAGCCCCAGCCCTGGCCCAAACCCCACCTCCAGAACGGTGTCATCAGGCTGAATCTGGAGCAGCTTCACTGCATTCTCCTGCGCCAATCTGTGGTGCCACAGGAAAAACCTGGTCACCACCCATCCAAGCAGGGACTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57375 lncRNA upstream 91643 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 117404 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 169532 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 200716 38588879 ~ 38590159 (+) True G46034
TU57358 lncRNA upstream 223556 38566649 ~ 38567319 (+) True G46016
TU57522 lncRNA downstream 136632 38934463 ~ 38939511 (+) True G46138
TU57779 lncRNA downstream 1568635 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1588203 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 1594057 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 1618801 40416632 ~ 40425507 (+) True G46360
AMCG00013679 mRNA upstream 23249 38764988 ~ 38767626 (+) True AMCG00013679
AMCG00013674 mRNA upstream 42037 38747115 ~ 38748838 (+) True AMCG00013674
AMCG00013673 mRNA upstream 49836 38738234 ~ 38741039 (+) True AMCG00013673
AMCG00013678 mRNA upstream 67967 38709975 ~ 38722908 (+) True AMCG00013678
AMCG00013672 mRNA upstream 83521 38697380 ~ 38707354 (+) True AMCG00013672
AMCG00013681 mRNA downstream 14114 38811945 ~ 38821954 (+) True AMCG00013681
AMCG00013680 mRNA downstream 28751 38826582 ~ 38829568 (+) True AMCG00013680
AMCG00013683 mRNA downstream 33524 38831355 ~ 38844099 (+) True AMCG00013683
AMCG00013692 mRNA downstream 318782 39116613 ~ 39125103 (+) True AMCG00013692
AMCG00013694 mRNA downstream 373079 39170910 ~ 39177969 (+) True AMCG00013694
TU57357 other upstream 225881 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 417677 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 559545 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 732041 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1470544 37315486 ~ 37320331 (+) False AMCG00013595
TU57427 other downstream 21578 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 764142 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1552821 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3630270 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3630270 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile