RNA id: AMCG00013683


Basic Information

Item Value
RNA id AMCG00013683
length 1503
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00013683
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38831355 ~ 38844099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTCGAGCGGCGGGCTGTGCTCCGGGGCGCCGCCGCTCCTGTCCCTGTCTTTCTCCGGCTCCGGGTTCCTGGCGGTGTACCAGCTGGGTGCCGCGCAGTGTCTGCTGGACGTGGCGCCCCGGCTCATCCGCTCCGCGCCCAAGGTGTTCGGGGCCTCGGCCGGGTCTCTGGCTGCAGCGGCTGTGGTGTGCGGCTCCAGCATGGAGCGCCTGCGGGACGAAATGGTGGCCACAGCGCAGGAGAGCAGGAAGCACCTGCTGGGCCCCCTGCACCCTTCCTTCAGCCTCTTCAAGCAGCTGGAGTGCTGCCTCCTGCGCAGCCTGCCGGACAACGCCCACGAGCTCGCCGCCGGCCGCCTGCACATCTCCATGACGCGCCTGCAGGATGGACAGAACATCCTGGTGTCCGACTTCCAATCCAAAGATGACCTGGTTCAGCGCTACATTGATGGGGGCTTCACCAACATCCAGCCCATCCAGGACTCCTCCCAGACCCTGACCGTGTGCCCGTTCGCTGGCGAGGCTCTAAATACGGCCTATTACCGGGGATACCAAGATACAATTTTCTTCCTGCAGTCCAATGATCTGATGGAAAATAAGCCTCCTTGGATTCCCAGCGACCCCTGTCTGTCCAGCCTGTGCTCAGACACTTCAATGCAGCATCAGACTGTTCTGTGGGAAGAGGAGCGGGGGCAGGGTGAGGCTGAGAGCGACACGGAGACCCCAGCAGGCCCTGAGGGGAGCCCAGACTCGGCTGAGGAGCGGTGCGATCCGGTGGACGATGTGAGCTGGGATCTGAGCTCCTTGGAGCAGGCTTTCTATCACGGTCTGCCAGCCTGGATACAGGGAGCGTTACTGTGCAACCTAGTGGTACAGCTGGGCCTTGCAGGATTCCAGAACAGCTTTTTCCCAGCCCACCTGCTGTCGTACCTGCTCCTGCCCTACACTCTCCCCATCTTTGTCGTCTTCTCCTTCGGCCAGAAGGTGCTGCGGTGGCTGGAAAACATACCAGAGGAGGTGTTTTGGCTGTGGCAGGATGTCAAGCAGCTCAGCATTGTCCTCACAAACGTTGTGGTCAGGAGCTTTCAGAAGAACCTGGCAGAAAgAATCATCCCCGGGCTCTTCCCGTCCCCTGTGCTGGGGGTCCTGATGGAGCCAGACATCCCCAGCCAGTCTCCCAGTCTCCGTCGGCGCTCAGTTTTACGTCTCCAGCTCTCCACCTCCAGCTCCTCGTTCCCCGAGGACACAGACTCTCACTCCGACGGCAACCCAGACCCGCCAGCCTTCACCTTCCTGCTGAACCTGCAGCTGGAGCTGGACAGCCAGCCTAGGGCAGCCTTAACACGCACCGAGGAAGACTTCCCTCTGGAGTTCAAGGAAAGCCCAGAAGAAGTGCCCAGCTCCCCGAACATCACCCTGCTGGAGTTGGAGGAGGTCGAGGCACCGCAGGAGGCGTACAGTGCCATGTCTTTTGTCCCACAGCAGCTGGAATGCTCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57375 lncRNA upstream 132123 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 157884 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 210012 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 241196 38588879 ~ 38590159 (+) True G46034
TU57358 lncRNA upstream 264036 38566649 ~ 38567319 (+) True G46016
TU57522 lncRNA downstream 90364 38934463 ~ 38939511 (+) True G46138
TU57779 lncRNA downstream 1522367 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1541935 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 1547789 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 1572533 40416632 ~ 40425507 (+) True G46360
AMCG00013680 mRNA upstream 1787 38826582 ~ 38829568 (+) True AMCG00013680
AMCG00013681 mRNA upstream 9401 38811945 ~ 38821954 (+) True AMCG00013681
AMCG00013682 mRNA upstream 33524 38790875 ~ 38797831 (+) True AMCG00013682
AMCG00013679 mRNA upstream 63729 38764988 ~ 38767626 (+) True AMCG00013679
AMCG00013674 mRNA upstream 82517 38747115 ~ 38748838 (+) True AMCG00013674
AMCG00013692 mRNA downstream 272514 39116613 ~ 39125103 (+) True AMCG00013692
AMCG00013694 mRNA downstream 326811 39170910 ~ 39177969 (+) True AMCG00013694
AMCG00013695 mRNA downstream 367290 39211389 ~ 39225998 (+) True AMCG00013695
AMCG00013693 mRNA downstream 383283 39227382 ~ 39233057 (+) True AMCG00013693
AMCG00013704 mRNA downstream 434698 39278797 ~ 39279591 (+) True AMCG00013704
TU57427 other upstream 9402 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 266361 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 458157 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 600025 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 772521 38054904 ~ 38058834 (+) False AMCG00013629
TU57658 other downstream 717874 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1506553 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3584002 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3584002 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 3584002 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile