RNA id: AMCG00013694


Basic Information

Item Value
RNA id AMCG00013694
length 3861
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00013694
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39170910 ~ 39177969 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGTCacaccacaaaacacaaaacaggctGACCTGAAGAGCAACTCCCTGCTCACTCTACACGCTACTGACCTGACTGACCCCTCACTcatccctcctctctccctctctgtgtccccAGGAGTGTACATCCTCATAGGAGCTGGTGGTCTTATGATGCTGGTGGGATTCTTTGGCTGCTGTGGAGCTGTCCGGGAGTCCCAGTGCCTTCTGGGATCATTCTTCACCTGTCTTGTGGTCATCTTTGCTGCAGAGGTAGCGGCTGGAGTATTTGGATTCCTAAACAGGGAAAAGcttgattgctGCGGTGATGGGAAAGACAATTCCAATATTCAGCAGCTCTGTCCTGAGCCGAAACAACAgAACTGTTACACAGCAGTATTCGAATTTTTCAATGGCAAGCTCTACATTATTGGTTATGTTGGGATTGGGATTGCAGGAGTGATGATCATCGGGATGGTTTTCAGCATGGTCCTGTGCTGCGCGATACGAAACTCGAGGGAAATGATCTAGCCTCGCCCACGGCCTCCCCCACTACCCCACCCTacccctccttccctcccacTGTCACCACCACCTGCCCCCTGCATTGTGACCTGCGCTGGACCTTAATGGACCCAAGAGCCTCTGAGACAAACCATCCAGACTGGTGCAGTCCAGGAGAGCTGGGTGGTGAATTGGAGAGCCTGCTTTTGAAAAAGTCTGTCAAATTAGCACACTCGGTTGTCACACTGAATAATTTTGTGAGCTGCTACAGACACTTCCATCTTTCTCCAGACTGTAATTAGTAAAACTTGGGTCATGGGTCACGTTTCTACACAGAAAACACTCACATCTTTGATTAGGAAAGCATATAGGACGGTGCATTATGCAAATTTATACAATAACCAAAGCACACGGACACCTGGTAAGGTTTGTTTGTTCACAAGCTATATAGATGCTTTTACAACACCCAAACTAACTAAGGAACTAAGGCCTTGTTTGCAAGCTTCACATACATGCTTTAAAGCTGATTTTTCAAATTGCCTTTCAACGTAGGAGGAAGGCATTTAATTTCAGTACTGTTGCACCCACATGTTTAAGATTCtgatgaaaatattttgtaatgcgACCCCCACCGCATTATGTTTCTTACAGCCAAGCCTGTTGGCCTGGTTTGTGGGATTTAAACCGTATTCTGCATTCCAGTGAGTGAGTGTTTTCTTTGTAGAAAATCCTGTGTTTGTAAAGCGATAGAAAAGGGGGTTGGTGCTGTCTTGGGAAATGGGAAACAcggttaaaaatgaaaaatgttttgcagcaaGCCCTGTACCAAGTGAAAAATGTTTCAATCCCCTACAGCAGTGCTTGGCATAAAACCTCCGTAACTTTAATAAACAGCTGAaagctgtatataaataaaacaatcccaTTTGTGGAAGCAAATATTATAAAGTGTGCTGCGTTGACAAGGATTATCCCCACGGCAATGCtgattgaaaatatacaatatgaCAGATACGCTGCAGGTTAATGTTTTCAAGCCGTGGTTGCTGCACACAACAAAGTCTAAAAGTCTAAAAACAAGAACTAGTTTAACAATGGAAAAATGTGCAGTTCATAATTATGAATACTTTTTTTACTGCAGTTTATTATAGACAAAATGGGACCGAAGGAAACAAAATTACAGGGGACTGCTGCAGTATTTTTCACCTACTGTACagccattttttttctgtttttgttggtaGTGGtgatgttgttttaatataccAGTGCTGTGAACCAGTCCAGTGAGATGGAAGCAGGGTTCTCTGGTTCTCCAGCCAGATGAGGCCAGGAGCCTGTCCTAAACGTGGGTCTGCACTGATGGTGCTCAAGCTTGGGTCACTCATGAGAGCAGCCCAGtccagcagaaaacaaacacacagcggGTGTCGCCTCTGCCACACACAGGCCTGACATTTCCACCTACGGCAGATTACTTTGAATACATCAGATACAACTCTGCTCAATTTTTCACCCTACCAAAATGGTAAAATCAATCCGTAAGCATCTATTCATGAGTATTCAGAATTTTGGAAAAGAGATATGGATTTGAATTAAGTGAATATGATTTGaatttgttctctttttaagaaaaatgaTTAGCCACTACTTCAGTCGATGAAGCCAGGGGGCCTTTAAGTTATTTAACATCATAAAAGTATACACTTATTGTTGACATGAAAGAGATACATTTTCAGTGCTTTGGTATTTATACTTCAGGTATACAAATTCAGGcataaaaggtgttttttttgtagagGGCCCAAATTGGAACCTGactacaacattttattttattaattcactgATTAGCTCAAACTGCCCAAAATtagatgaaaatgtattgctgttaaAATGATTTTAGCATTATCCCTAAAGACCTCACAATGTTCAGAAGTCTGTGTCACCTAGCTGTGCCTTGCAAAAAAATGCCAAGAGAAATCAATTCAGGTTCTGTGTATTAATTTCCCTGTTTCTGGGCCTGAACTCGTGTGTGCTCCTTGTTTGAATTACCTTCGCCAGTGCCCACTAAaagatttgtacattttgtgtgaattttgtaattttacttttttgttgttgtgcgCTCATAATATAGTTTGAAATGGAAAGTACTGTTGAAATGTGTCATAGAGGCAGCTTGTGTTAGATGTAGTGTTTTGggataataatgtaaaaaaaatatatatatattgcttgtCACAGCATGTCTGTTTATAACGTGCCTTTTTTTAagagaagaaatgaaaacatcaatGTTTTGTTGTACCTTAACGATACAGAGCAAAGAAAAAGGGTGTGAGTTTTAAATTTGATGGTGTTCAGGTGACGTTCATGTGAGGGAGCAAAGATTGGGAATGAGGTCTTGAAGTGTTTTCCTGCAGTTTGACcctgctttaaaaatgaaacggCAGACACAAATAAAATTCCTGTGGCCCATGCCTTTTCCCCAACACATGCCAGACACATAAATTAATAGTGCTGATTGTGTTTAATAAGTAAATTGTGTAAATTAGTAAATTCTCAGTTGTACTACAGCAAGGCATTTTGACAGAGCAGTTCTCTAACATTAGCATAGATGATCCAAACATTTGTGGTAATGACCAGCCTCCAGCAGTCATGCCGTACTCTGGGCCATTTCATCCTTCAGGTGTTGTCTCTACATGTAGGTAAGTTATTTATGCATCTGGATTCAGGACTCgcagatcatttatttttcaatgtcgACCAATTGGCAGAAATATCAGACATTTGTTAACTGAACAGTCATTCACCGTGGTTGAGCACACTTTGCCACAGTTCTCAGATCTACAAGTATATTCTGTAATTGTGTTGCATGAGAAATACATCTTAGATATGTACATTGATTATTGTCAGAGGCAGTCTGCACAGTAGCAACTCGTGGTATTTCAGCAGACTGATCAGTAAGTTAGAAAATCATGGGAAAATTACTTAGATTGCACTTTTGTTAGTGGAATGCTTTACCGATTTTAATGGAAGTTTATTGATGATAGAAAGTAAGACATTTTGCATCAGGTTTTTGCTTATGAGGGTCTGTAGTCAGGAGATTAAGAGAGTTGTTCTTCAGGTATTAGGTTAGTTTTACACCGTCATtccttaaaacatatattttgagAAGGCAGAAAGAAGTAAAGAAATCTGGGATGAGAAGTACTGTatgcaagcaaaaaaaaatgcattacaattaaacatGTTGATTGATCATatgttgttaatttatttaatggctGATTTTATCTGAAGGTTCAATTGGCATTGAAACTTCTCAGGAAGATAAATGTGCAAAAACTAATAAACTTTTTCTAAAGTTTT

Function

GO: NA

KEGG:

id description
K17354 TSPAN2; tetraspanin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 231399 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 471678 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 497439 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 549567 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 580751 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 1188497 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1208065 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 1213919 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 1238663 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 1704880 40882849 ~ 40885629 (+) True G46455
AMCG00013692 mRNA upstream 45807 39116613 ~ 39125103 (+) True AMCG00013692
AMCG00013683 mRNA upstream 326811 38831355 ~ 38844099 (+) True AMCG00013683
AMCG00013680 mRNA upstream 341342 38826582 ~ 38829568 (+) True AMCG00013680
AMCG00013681 mRNA upstream 348956 38811945 ~ 38821954 (+) True AMCG00013681
AMCG00013682 mRNA upstream 373079 38790875 ~ 38797831 (+) True AMCG00013682
AMCG00013695 mRNA downstream 33420 39211389 ~ 39225998 (+) True AMCG00013695
AMCG00013693 mRNA downstream 49413 39227382 ~ 39233057 (+) True AMCG00013693
AMCG00013704 mRNA downstream 100828 39278797 ~ 39279591 (+) True AMCG00013704
AMCG00013702 mRNA downstream 168921 39346890 ~ 39406693 (+) True AMCG00013702
AMCG00013708 mRNA downstream 351305 39529274 ~ 39540592 (+) True AMCG00013708
TU57427 other upstream 348957 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 605916 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 797712 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 939580 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 1112076 38054904 ~ 38058834 (+) False AMCG00013629
TU57658 other downstream 384004 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1172683 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3250132 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3250132 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 3250132 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile