RNA id: AMCG00013705


Basic Information

Item Value
RNA id AMCG00013705
length 2802
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00013705
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39553959 ~ 39560813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGGCAAAGTCATTCCTCACACCCCCATTGCCGTGGATTTCTGGCAGGTGCGCAAATGCAGCTATGTGCGCTTGTTTTTCCTCTCCCACATGCACAGCGACCACACTTCAGGACTGACCTCCACCTGGACCAACAGGCCCATCTTCTGCTCCCCGGTGAAGGAGAAATGGATACACCCCCTGGAAGTTGGAGACACGCACATGTTGCCCTTGGATGACATTGGCAAGGAGACGATGACAGTCACCCTGATTGATGCCAACCACTGCCCGGGATCGGTCATGTTTCTCTTCGAAGGCTACTTTGGCACCATCCTTTACACAGGTGATTTCCGCTACATGCCATCCATCCTGCGTGAGCCCTGCCTGGGGAACTACAAAAGGATTGATGTCCTGTACCTGGACGATACCAACTGCGACCCCTCTAGGACCCTCCCATCCCGCCAGCAGGCCACCCAGCAAATCAAGGAGATCATCCGGAAACACCCACTCCACAATATTATCATCGGCCTCTATGAACTGGGCAAGGAGACTCTGTTGGTGGAGCTGGCTATGGAGTTTAAGACCTGGGTGGAGGTGAGTCCAGAGCGGTTGCAGACCCTGCAAGCCCTGAACCTCCCAGACGTGTTCACCACAGAGCCGGGGGCCGGGCGCATCCGTGTGGTGTCTCACTCCGAAATCAGAAGCTCTTCCTTGGTTTTGTGGAACAGGGAGCACCCTACACTGGCGATTCTACCCACCAGCCGACCCCTGGCTGTCATCCACCCCTGCATGTATGTGGTGCCCTACTCTGACCACTCCTCATTCCAGGAGCTGGAGGACTTTGTTGCGGCCCTCAGACCCGCTTCTTTGGTCCCTATTGTGGGCACCTGCATCCCCCACTTCTCCGCTCTCCTGAGCCCCAGTAAAGCAACCAGGGATGTTTTTGTGCCCGACTCTGTAAGGCAGTTTATGATGAATCTCCCCAAACCCAGTCCCCAAACCAAACCCCAGCTTGGGGTCTCCCATTGTGGCGTCCCTTTCCCCAGGGGAGTGGTCTTCGAGTCTCCGGTTCGCAGTACCGAGTCTCCGGTTCGCAGTACCAAGCCTCCCGGAGTCCCGCAGGTGGAATGCCAGGAACAAAGTCCATTGGAAGATCCAGATCTGGATTCTGAAGAGGAAGGTGACCTGGATTGCCTCGCCACCAAAAGGCTCCCCGGGAAGCAGGTGAAGCTGCAGGATATTTGGAACCGTAATGTTGCCAAGAGGATGTTTCCGGATTCAAAGATGCCTGAAAACGAACTCGCACAGTCCACTGCCCCTTCTGCTGATAGAGAGATGAAGCAGACAAGGAGGATGCAGGCTGACCTTTTGGTGCCACCCACCGTGGAAGAGCTACCCCAGCCTATGCCTTATGATTCTGCCTGTATGGGTCACCTTCTCGCTGCCTCGACCCACAAGAATAATGCAGACATGAGGTCCGGGAGGTTACGCAAGGACTGGAAAAGGCAGCAACTGGCTTTGGCAGAATTGACCTGCATCTCGGGAAATGGGATCCCATCTAAGCAGCGCCTATCTGGAAAGGCCACCAATCCTCTCTTTGAACAATCCCAGAATTTTCCTGAATCTGAGTGTTCTGGTTGCAGTTCGTTTAATTGTAAGCACTGCAGACTGGAGGCTGAGGACCACTGGTTGTCTCAGCTCACAGAACACTCCTCTCTACCAGATGGAGAAATCTTCAGAGATACAGCACACACAGATGAGGGATTTTCCCAAAAATACCATCTGACTCCATTCAGTTTTCCACCCCATGATGGTCCTTTAACAAAGTTGTGGAGAGATTCTTCACTCGTTCCAAGCACTTaaacagttattgttttatggtGTCAATTGTATTTTAccccagtttgttttttctacttcGCCACTAGGGggtacttaatttaaaaatggtaaaatcatgttttttccaAGGCTGTTGACACTTGGACGCTCTCAGTGGACACTGAGAACcaattctgaaataaaaacagggtAAGCTGTGCTCAGCTCATAGCTGTGCCTGAATATCTCCTAAATTCCAAACTTTTACCTGAAGAATACTAAATCGACAGTATGTCCTTGCAGAATTTCTACCATACCTAGAAAACACTTTTGCCAAAGTAGAAACATTTTAACCATTTATCACTTTTATTAGTTCAATTGAGTGTTATGAAATGCTGCCAATAATCCCTCCAGCACTAGTTTTATAAACAGAGTTGTGGGGAAATCCCAGGCTCATCCTTTAGTAAGACTTTAGTAATGGCTATagattgttctgtattttaagtGTTGTATTTCCAGGAATTGATTACAACATCAGGGAAGTGCTTTTGTCTTGGGAACTGAGTGATTAATGATAACTTGTGACAAACCACCACTGCAAAACCACTTCTACTTCAATAAACCAGATTTAATTTTGGGTTGTGGTATAGCGGCTTGTGCAGTAAAGGCCCTGCAAAACTCACCTGGGAAGTTAAATGACCTTGCAAATAGATGTACAGGgagtatgtgtatatgtaagCAAAGTACCATTTATAATAAttgaagtgtatatatatatatatatatatatatatatatatatatacacacacacacagtactatATGTTTATCCAATAATTTAGGTTTGTATTTGAGATAAATCAAGCCTGTTTCAGTCTATTGTTTATTGGGGCATTTTGAATATGTGTGTATTGTACTCAAGTTAAATGTATTCGGGGGTACCACGGTGGGTCAGTGCTTAGTGCTgttgcctcacagctcctgagAACGTGGTTTA

Function

GO: NA

KEGG:

id description
K15341 DCLRE1B, SNM1B; DNA cross-link repair 1B protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 614448 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 854727 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 880488 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 932616 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 963800 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 805653 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 825221 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 831075 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 855819 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 1322036 40882849 ~ 40885629 (+) True G46455
AMCG00013708 mRNA upstream 13367 39529274 ~ 39540592 (+) True AMCG00013708
AMCG00013702 mRNA upstream 147266 39346890 ~ 39406693 (+) True AMCG00013702
AMCG00013704 mRNA upstream 274368 39278797 ~ 39279591 (+) True AMCG00013704
AMCG00013693 mRNA upstream 320902 39227382 ~ 39233057 (+) True AMCG00013693
AMCG00013695 mRNA upstream 327961 39211389 ~ 39225998 (+) True AMCG00013695
AMCG00013707 mRNA downstream 42288 39603101 ~ 39627214 (+) True AMCG00013707
AMCG00013706 mRNA downstream 72378 39633191 ~ 39640768 (+) True AMCG00013706
AMCG00013711 mRNA downstream 156154 39716967 ~ 39732114 (+) True AMCG00013711
AMCG00013712 mRNA downstream 176914 39737727 ~ 39745523 (+) True AMCG00013712
AMCG00013719 mRNA downstream 192921 39753734 ~ 39754705 (+) True AMCG00013719
TU57427 other upstream 732006 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 988965 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1180761 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 1322629 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 1495125 38054904 ~ 38058834 (+) False AMCG00013629
TU57658 other downstream 1160 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 789839 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2867288 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2867288 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2867288 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile