RNA id: AMCG00013706


Basic Information

Item Value
RNA id AMCG00013706
length 1737
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00013706
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39633191 ~ 39640768 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTGCACCGCGCCGCCCTCCTACACCAATGTCCTCCTCCGAGACAGACATCCCACTCGGAGTCGTTACCCTTCAGATGCCAAAGTTATTTACACATGTGCTGAGGGATACATAAGAGCAGGGGGCAGCTGGGCTGTGTTTTGCATAAATGGCAAATGGACAACACTGACATTGAATTGTGTTAAGTGTGCTGACCCCCCCGAGGCAGCGGGTCTGAGAAGGACGGGCCCCTTGGAAGGACCGTTTGACTACAACACCGTGCTGAGCTACAGCTACATTAACTGTCCAGCTCCCTATTTGAAGAATGGCAGACTGACAAGTGGATTCAGTGTGTTGTTTAAGTACAGAGCCACGGTTTCTTTTGCGTGCCATGCTGGGTATGAACTGAATGGAGCCAGATGGATCACCTGTGAAAAGGATGGCCGTTGGCATCCCGAGATTCCCAAGTGTGAGCTCAGAGAAGTTTACTGTCCGAGACCCTCTGTGCTCAATGGCAGGCGCACGAGTGGATATCGATCAATGTATAAACACGGAGACTCGGCTACGTTCTCTTGCAACCCGGGGTATCGCCGGAGTGGAGCCGTTCTGATCACTTGTGGGGAAGATGGCCGTTGGGCTCCTGAGATTCCTCAGTGTTTAGAGGTTTATTGTCCAGCCCCCTCTGTGACCAATGGCAGCATTACACATGGATACAACATCAAGTATGAATATAGACatacagttttgtttgcttgcaATGCCGGGTATCAGCTGCATGGAGCCGACTTGATCACCTGTGAAGAGGATGGCCATTGGCTTCCTAAAATCCCTGAATGTTTGCCCCTCAAAGAGATTACCTGCGCTGCTCCAAGTGTGACCGacagcacagtgacacacgGAGGCAAAGACATCTACCAAGATGGCGACTCAGTGACTCTGAGCTGCGATGAGGGCTTTGTGCTGAACGGACACAGCACTGTGAGCTGTGGAGGGAACGGGGAGTGGAGTCCTCCTGTTCCCACATGTCAAGCACTCAACAAGGTTTATTGTCCAGCCCCCTCTGTGACCAATGGCAGCATTACACATGGACACAACATCAAGTATGAATATagaaatacagttttgtttgcttgcaATGCGGGGTATCAGCTGCATGGAGCCGACTTGATCACCTGTGAAGAGGATGGCCATTGTGCGCCTCCACCCCATCCCAATGCAAAACCTACAGAGAAGAAGCCGACATACAGTACCGGTCAGATGGTCATGTACAAATGTGTTGTGGGATACAAAAGAGAGGGAGGGTCCTTGTATATCCGATGCAACGATGGCCAATGGACACCACTGACACTGCAGTGTGAAAAGTACTGTCCTCATGTCATTGAATTGTGCCTGGTGCTTTTTGCCTTAGAAAAATCGTGTGGCTCCGCAGGGGAGATATTGAATGGGATGTTCAAATACGAAGACATAACATTTGGCTCTAAGGCGACGGCTGTGTGTGACGAAGGGTATCGCTTGGTGGGCAGGGGCTACAGGCAGTGCAAAGACTTGGGCTGGGATGGTGATATCCCCCTGTGTGAAGTTGCGAAGTGTCCTGCCCCCCGAAAGGCAGCTGGTCTGAGAAGGACGGGCCCCCAGGAAGGACCGTTTGACTACAACACCGTGCTGAGCTACAGCTGTGAGAGGGGGACACTCATCGGGAGCAGAGAGATTTACTGCACTGAGAACGGGACCTGGAGCGGCCCACTGCCAAAGTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 693680 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 933959 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 959720 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1011848 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 1043032 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 725698 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 745266 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 751120 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 775864 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 1242081 40882849 ~ 40885629 (+) True G46455
AMCG00013707 mRNA upstream 5977 39603101 ~ 39627214 (+) True AMCG00013707
AMCG00013705 mRNA upstream 72378 39553959 ~ 39560813 (+) True AMCG00013705
AMCG00013708 mRNA upstream 92599 39529274 ~ 39540592 (+) True AMCG00013708
AMCG00013702 mRNA upstream 226498 39346890 ~ 39406693 (+) True AMCG00013702
AMCG00013704 mRNA upstream 353600 39278797 ~ 39279591 (+) True AMCG00013704
AMCG00013711 mRNA downstream 76199 39716967 ~ 39732114 (+) True AMCG00013711
AMCG00013712 mRNA downstream 96959 39737727 ~ 39745523 (+) True AMCG00013712
AMCG00013719 mRNA downstream 112966 39753734 ~ 39754705 (+) True AMCG00013719
AMCG00013721 mRNA downstream 120412 39761180 ~ 39779054 (+) True AMCG00013721
AMCG00013724 mRNA downstream 138451 39779219 ~ 39780190 (+) True AMCG00013724
TU57658 other upstream 70891 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 811238 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1068197 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1259993 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 1401861 38230566 ~ 38231330 (+) True G45850
TU57778 other downstream 709884 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2787333 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2787333 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2787333 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 3004219 42644987 ~ 42648754 (+) True G46723

Expression Profile