RNA id: AMCG00013711


Basic Information

Item Value
RNA id AMCG00013711
length 1992
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00013711
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39716967 ~ 39732114 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATCAGGAGCGCCCACGCTATGTGATTGACAGGCCAGCTTACTCCCTCCCGGGATTCGATGAAGACTTCGACAAGAGGAACCGAATTTTTCCCACGGCAGAGAAAGTCAAGAAATTATTCAGGTGTTCGGGGTCCAGGTTGAAAGCCATAGCGTTCTGCCTCTTCCCCATCCTCAGCTGGCTGCCCAAGTACAAAGTGAAGCAAAACCTTCTGGTCGATGTCATCAGTGGGGTCAGCGCTGGCACCATACAGGTCCCGCAAGGTACCTTTGCAGTGCTCAGTATCATGGTTGGAATGGTATGTATGGATCTGGCACCCACTTCTCAATTTGAGCACTACGACGCCACCCTGAATGTCACAGTTCTGAACGAGACTGTGATGAACGAAGTCCGCCTGCATATCTCGGGGACACTGGCCTGTCTCACGGCTCTCATACAGATGGGACTGGGACTGATGCAGTTTGGCTTTGTGGCAATCTACCTATCTGAATCCTTCGTCAGAGGCTTCATGACAGCCGCGGGGCTACAGATCCTCATCTCAGTGCTCAAATATATCTTCGGTATCTATGTGCGCCCGTACAGCGGACCCCTGGCTGTCATCTATACTCTAAGGGATATCTGCCTTGGCCTGCCCAAAACCAATGTGGCGTCTCTGGTGTTTGCTGTGGTCAGCAGCGTGGCCCTCATCCTGGTGAAGGAGATCAGCGCGCGATACCGACATAAGATACCCTTCCCCATCCCCATGGAGATCATCATTGTGGTAGTGGCTACAGCCATTTCTGGCCCCCTGGACATGcctaagaaatacaaaatggacATTGTGGGGCAGATTCCTCTGGGGTTCCCCGCTCCTATTATCCCAGATGTGAGCCAGTGGGGGGATATGATCGGCACGGCCTTCTCTCTCGCCATTGTTGGATATGTGATCAATCTGGCCATGGGGAGGACCCTGGCGGCTAAGTACGGCTACGACGTTGACCCCAACCAGGAGATGTTGGCTCTGGGCTGCAGTAACTTCTTGGGCTCGTTTTTTAAAATCCATGTAATTTGCTGTGCCCTGTCAGTCACACTGGCTGTGGACAGTGCAGGAGGCAGTTCACAGTTCTCTAGTCTCTGTGTGATGCTGGTGGTGATGGTGACAATGCTAGCATTAGGAGCGTTCCTCAAACCACTGCCCAAGAACACCCTCCTCCAACTCTCGGATCCCTACTACCTGTGGAAGAAGAGCAAGCTAGACTGTtgtgtCTGGGTTGTAAGTTTCCTCTCCACATTCTTCCTCAGTCTCCCGTATGGGGTGGCCATTGGAGTGGCCTTCTCTGTGTTGGTGGTGATCTTCCAGACACAGTtCCGAAACGGTTCAGAACTTGGACAGATCTTGGACACAGATCTCTACAAGAACCCTAAGGTGTACAGCAAGGTGAAATATGTTGAAGGGGTGAAGATCGTCAATTACTGCTCTCCTCTGTACTTTGCCAATGCTGAAATATTCCGCAGAAAGGTCATCAAAAAGACAGGGCTGGACCCTGGGAAGATGCTACTTGCCAGGAGGAAATTTCTGAAGAAGCAGCAGCAAGGAATGAGGGAACAAGAAAAGAAGGAGAACCGGAGGAAGAAGAACTCTCTTGTCATTATGAAAAACCAGACCACCTCCCGGCAGGAGCTACAAAATGACTTTGACAGTTCCAGTATCAACAAAATAGAAGGCGGTCTCCCCGCGTCTTATGTCAATTTTAACTGCAGTGTTGTGGACCTGGGAGGAACGAGTTCTGATGACCCAAATGCTCAACCAGTTCAAATTCAGCCCCCTCCCACTCCCTTCCACACCCTGATCCTAGACCTGGCAGGAGTCTGCTTCATAGATCTCATGGGCATCAAAGTGCTGACCAAGGTTTACGAGGAGCTGGAGACAGGAGGGGTGTTTGAAGAGGGCAGCCTGGATCGTAGTCACCTGTTCCTGTCTGTTCACGATGCCATCCTCTTCGCATTGGAA

Function

GO: NA

KEGG:

id description
K14706 SLC26A9; solute carrier family 26 (sulfate anion transporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 777456 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1017735 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1043496 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1095624 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 1126808 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 634352 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 653920 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 659774 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 684518 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 1150735 40882849 ~ 40885629 (+) True G46455
AMCG00013706 mRNA upstream 76199 39633191 ~ 39640768 (+) True AMCG00013706
AMCG00013707 mRNA upstream 89753 39603101 ~ 39627214 (+) True AMCG00013707
AMCG00013705 mRNA upstream 156154 39553959 ~ 39560813 (+) True AMCG00013705
AMCG00013708 mRNA upstream 176375 39529274 ~ 39540592 (+) True AMCG00013708
AMCG00013702 mRNA upstream 310274 39346890 ~ 39406693 (+) True AMCG00013702
AMCG00013712 mRNA downstream 5613 39737727 ~ 39745523 (+) True AMCG00013712
AMCG00013719 mRNA downstream 21620 39753734 ~ 39754705 (+) True AMCG00013719
AMCG00013721 mRNA downstream 29066 39761180 ~ 39779054 (+) True AMCG00013721
AMCG00013724 mRNA downstream 47105 39779219 ~ 39780190 (+) True AMCG00013724
AMCG00013720 mRNA downstream 57518 39789632 ~ 39897168 (+) True AMCG00013720
TU57658 other upstream 154667 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 895014 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1151973 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1343769 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 1485637 38230566 ~ 38231330 (+) True G45850
TU57778 other downstream 618538 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2695987 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2695987 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2695987 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2912873 42644987 ~ 42648754 (+) True G46723

Expression Profile