RNA id: AMCG00013726


Basic Information

Item Value
RNA id AMCG00013726
length 3676
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00013726
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40327898 ~ 40341318 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTTTAGATGCTGTCATGTCCCAAGACCCCACTGAAACATCACCATCATTAAGCACAGCATCTCACATCTCCATTACAGTTCCAACAACAGCAGATTTAACATCAAAACCTGCTGGTACTACTGCGATTCCCGATACTACTTCTCAGAGTCTCGAGAAGACAACCGTTGCAGAGACCCTAAGCACAGAGGCAGTCACCACTAAAGCCCAAACTGCTGACACAACTACAACAGAGTCCAATCACACCACCGATGGAAGCAAAGCCAGTACGATGCCACCGAGTACCACCATAGCCACAACTCTCCTAAGCAGCACAGTGATCCATAGTATGACAGAAATAGATGCTCTTGGCAGCACCTCGGCCAATGTGCCCGACTCTGTGCCTTACATGCTGGGGATCCAGGAAGCAACCCCCAGATGGGGCAAACGTTCTCCAACCGTCCTGGTCTCCCTGCTACTGGCAGGATTGCTGCTGGCTGCCCTCCTCATCGGTGTCTACTGCTTCAAGACTCGACAGAACCACACCTCCAAGGGCATGAGACTGGCCGAGGAGCCCTACCAGACTGATGAGGAAAATCAGGGCAACACCCTGGTGTCTGTGGCCCCGCTGAACCCTCCAGAACCCCAGGAGAAACCGAGCATCAACGGGGAGTCTGCTGAAACAGTGAAGAGCCAGCCACCGCCGCATAGCACAGCTACGACCACAACCAACGGCCACTCGGCCAGCAAGCAAGCCCCAGTGGCTGACACAGAGCTGTAACTTGAATGTCATAAACAAACCAGCAAGGACAAACCAAAGACTGACACAAAGACCACAGACCAGAATCATCTTTGTATCTTTTATCTACTTTGTccgtttcatttcatttttccacTACTTTGCTCTTGCCTGCTGACGATTAACTTAATGAAAAGTGCAACAGACAGCAAtccacaataatacaaataataataatacaaataataataactaaattgTGAAGATAAAAGACTACATCAGCAGACAggttatcatttttaaatcaaccgTGGGTGAAAAACTGCTAATTGAGTTCAGAAGGCAAATCAGATAGACTGTCACTGGGAATTCACTATTAATGCtgtagttttttatttgaattattactTAATTATCCACTTACACATGCTTGAACAAAATATTTACTACATAATATATGGTTTAATTTCCATGTGCACTTGTTGGAAATTATAGCATCACAGCATTGCTCCGATGAATACAATACACACTTGCGGAAAATATCTAAACTGACTCATATTGGCAGGAAATCAAATTTATAATACATACTTTTGCCGCAGAAATAATGTTAATACTAATCTTACAGATAAACATACTAGATATTGTAGTGGAGATCTCAATGCCCATTTTTGTATCACTCCCTGTAGCCAGCTAAAAGCCAAAtgagaaattataataatggtaaataaatgtGCTTATTGTTGATTGTGAACCCTGAGCTATAATGTGCTGATGATACACAGTCTACTTACACACGCCCACAGTTCCTTCTCCCCTcgtttactgtattttatgttttgtttaaactcATGAAAAGTCCTGTACATTAAGACAACGTGATGGCTTGGGGAGTTAAGTTGCCAAATTTGACTGGGATGCACAATAAATGTTCCTCTAATGGTGCTTATCTTAGACATTTGACAAactggcacttagaagagggaaagcaaaaataattcTCCATTTCATTACCGCAAGCTTTACCAAGATCAGTGGAGGCCTGAGCTGACAAGCATCGGCTCCACTGTGAACCATACTGgggtctgttttatttttgttggtttcCTTTTTGCAGTGTCAACAGTTTCAGATGTTTAGCTGCAATGTCACTGCTGTGAAAATGGCCTAAGACACTTGTAGTGGAGTTACTAATGCTTTCGTCACACCATGTGcctatttctgttttttcagtattatgctttttgtttgttttgtgttttcaatttctGTAATGTTATAGTCActtctaatgtattttaatgtcttaTGAACGCAGCTTTTCTGTTTCAAACTACTGTAAATCTCTAAGCTCAAAGAAAGCCACAGATTAGCTAGATTAAggatttccttttgttttgtgtttgtttcttgagTCTTCAGAGACATTTTATTTGGAGGCCCTATGCAGAACGTGGATCTGCAAAGAGACCTGCATGaacctgttattttatttacacactgAGATTTCCAGGtgtccaaaataataatttggataTTGGAACTCTTTTGAAGCATTTATGAGTGCAGAGTTCTCTTCATTTTGCCATAAGAGGCATTCAACACCTACTGAACTAGCTAAATCTCCCCAGCCCACTTCAGTTAACCTCAGTTAATGTGAACATTCAGCTCACTCTTGGTAAATAAAGCAACAGGTTCATGCAGCACTGGTTTTAAACTGGAGGTTTGAAAATAACAATCCAATGTTGTTCTAGATTCTAAAACGTTTACAGAGCCccatcatattaaaatgagcacccCCCAGCAATGAAGAAGTTACTCTATTTTCCCATCATACCATTCCCCTGGTATATAAAATCATCCACCTTTATGGCTGTGTGCCTCAAGTCATGGATTACCAAGGCCAAATCAGAAGATGCTGATGGGTTTGTCTGCTCCATTTGATACCTGGTTTCTGGCTGCAGTTTTACCTTGACCCTATCAAGGCTGCTCATTTCAAAACTGCTGGGCTCTGACTTACAGTAGATGGTCATTTGAAATCCAAATGGCTTGTGGATTTGTTGATGATTTGAAAGGGATTGCCCCTccaaactttttattattattttgctttctttttacaAGTCATGATTAAAATCACCCCTTTGGTAATATACTCTTCTGTTCCTGGGCCAATGACAATCGCTTTGAGATGAATGAATTTTCAGGTTCTTAGGAGCCATTCCATTAAGTAGAATGCTAAAGCAAGTGTTTGCCAAttagtttcctttttaattcaCTAGCCGACTCGGTTAAACGGAGGCTCATACACAGACTGGGTCATAATGAATACATGGTCTTCAAACTGGTCTCCCACCTAGGCTTCACTTTCAgcttcttgttttattgtttgatcattttaatCTTATAAGGAGGTTTTAGTATTTCAATTTGGATTTGCCTGTGTCATTACAGATGCAGAAAAGCCAAGGTGCTTTTGATGTTATAAAACCTATTATTACATTATGATGATAAAGagataatgaagaaaaagattACTGCCCTAATTGTATGTGTCTGAAACTCCTCAGTtatgaatgttgtttttccatgtaACTGAAAAGGGAGGCGTATTCTAAGATACTGGATACAGGAATTAAGGTGTTAATGTTTTCAGTGATGCAagtcaattttacatttttgggcACACATGGGCTTTTctttttactatatatttttttttttacattccacAAGCAACTCTTAATTCTACTACCATTCAAGTCTATTAAAATGAAtcggcttttttatttttatttatgtttttattcaggGTAGGAATAAACATTGGAAATTAGTTTTGTATGAATACTGCTATTTCTCATAAATTTTGTATCTGTAAATAAGACAAATGCCTCCttcccatttaaaacaaaacttctgTATGCCTATAAATAGTGATTATTTGTTGAtgaacaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 1388387 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1628666 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1654427 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1706555 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 1737739 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 25148 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 44716 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 50570 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 75314 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 541531 40882849 ~ 40885629 (+) True G46455
AMCG00013727 mRNA upstream 56461 40183935 ~ 40271437 (+) True AMCG00013727
AMCG00013725 mRNA upstream 207773 40111794 ~ 40120125 (+) True AMCG00013725
AMCG00013720 mRNA upstream 430730 39789632 ~ 39897168 (+) True AMCG00013720
AMCG00013724 mRNA upstream 547708 39779219 ~ 39780190 (+) True AMCG00013724
AMCG00013721 mRNA upstream 548844 39761180 ~ 39779054 (+) True AMCG00013721
AMCG00013729 mRNA downstream 36414 40377732 ~ 40388323 (+) False AMCG00013729
AMCG00013728 mRNA downstream 104331 40445649 ~ 40467813 (+) True AMCG00013728
AMCG00013734 mRNA downstream 133707 40475025 ~ 40478788 (+) True AMCG00013734
AMCG00013731 mRNA downstream 214359 40555677 ~ 40604675 (+) True AMCG00013731
AMCG00013735 mRNA downstream 269518 40610836 ~ 40622089 (+) True AMCG00013735
TU57658 other upstream 765598 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 1505945 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1762904 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1954700 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 2096568 38230566 ~ 38231330 (+) True G45850
TU57778 other downstream 9334 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2086783 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2086783 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2086783 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2303669 42644987 ~ 42648754 (+) True G46723

Expression Profile