RNA id: AMCG00013729


Basic Information

Item Value
RNA id AMCG00013729
length 1334
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00013729
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40377732 ~ 40389941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCAATTGGTTTCaaagtatgtatttacttactcGCGGTACGGGAGGCGCTTTGTTACTTTTTGTGTGTCATGCCTCAAGCGCCCGGCATTGCGCTGCTGTCTGCGCTGCTGTCTGCGCTGCTGTCCTGCGCTGTGGACGCAGGCATGGGCGcggtgtgtgtgtatctgggcCAGTTCAAGAAGGAGGGAGCCCGGTGGAGCGACGGCGGCCTGTGCTGCAGCTGCGCAGCCCGCGGAACCGTCACCTGCGACCTGCCTGCCCCGGCCTGCGTGGACTCGCTCAACCATCGTGGCCCCGCCTCTGGGAGAGTGGTGCAACTTGACTGCCTTGAGTCTGCTGTGGAGATTAGGCTGAAACATGACCCCTTCCAGTCCGGCCACCAGGTTGAGCCGGGGGACGTGAGGCTGGGCTCGGGGGGCTGCGGCTTCACTGCAGATGAGGAAGAGTGGATCGTGTTCAGCTACCCACTGGAGGCTTGTAACAGCGTAACTCGGATGACAAGTGATGAGCTGATCTACTCCAATACTCTGTTCTACCGCTCCACCAGCACCGATGTCATTGTGCGAACTAACCCGTTCAGCATTCCTGTGCGGTGTGTTTACCCCAGGAGGCTGAATGTGTCCAGCACAGAGCTGAAGCCAGCCTGGTCTCCCTATGCCTCCAGACAGAGCTCACAGGGAGACCTGACCTTCACTCTGCGCCTCATGGCCGaGGACTGGAGAGAGGAGCGGACTTCAAACCAGTATCTCCTGAGCGAGGAGCTTCGCTTGGAGGCATCCGTGCACAATCTGACTCCAATGGGACTGCGGCTCTTTGTGGATGAGTGCGTCGCCACACCTACAGCAGACCGGGACGGTTCCATTCGGTACCCTTTCATTGACAGTTATGGGTGCTTTGTAGATGGTAAAATGAAGGGTTCCCTTTCGGATTTTGGAATCCCACGCACCAATGACAGAACCCTTCGTATTTTACTGGATGCCTTCCAGTTCCAGAACATAGACACCAGTACGATctttataaactgtattttgaagGCAGCCCCAGTAGATAGCACTCCAAGTGCTACTAACAAAGCATGCAGTTATGATCAGTATACCTCCAGCTGGCTCTCGGTGGATGGGAGTGATGAAGTGTGCGACTGCTGTGACTCCAAATGTCAGGACAGGAAGAGACGTCGTGCCACAGGCCGTGCTCCAATCAGAGAATCTCAAAGCCTCCTGTTGGGTCCCATTTTTATAAAAGACGGACACCAGGCCACCAAATCACTTTGTAGTGGAATGAGGAAACGCCCAGGTCACAGAGGACTGAGACTGTGGCCCCTGCAGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57779 lncRNA upstream 3932 40366466 ~ 40373800 (+) True G46345
TU57522 lncRNA upstream 1438221 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1678500 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1704261 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1756389 38590755 ~ 38621343 (+) True G46035
TU57791 lncRNA downstream 3565 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 28309 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 494526 40882849 ~ 40885629 (+) True G46455
TU57981 lncRNA downstream 814741 41203064 ~ 41204149 (+) True G46508
TU58024 lncRNA downstream 1025037 41413360 ~ 41413600 (+) True G46538
AMCG00013726 mRNA upstream 36414 40327898 ~ 40341318 (+) True AMCG00013726
AMCG00013727 mRNA upstream 106295 40183935 ~ 40271437 (+) True AMCG00013727
AMCG00013725 mRNA upstream 257607 40111794 ~ 40120125 (+) True AMCG00013725
AMCG00013720 mRNA upstream 480564 39789632 ~ 39897168 (+) True AMCG00013720
AMCG00013724 mRNA upstream 597542 39779219 ~ 39780190 (+) True AMCG00013724
AMCG00013728 mRNA downstream 57326 40445649 ~ 40467813 (+) True AMCG00013728
AMCG00013734 mRNA downstream 86702 40475025 ~ 40478788 (+) True AMCG00013734
AMCG00013731 mRNA downstream 167354 40555677 ~ 40604675 (+) True AMCG00013731
AMCG00013735 mRNA downstream 222513 40610836 ~ 40622089 (+) True AMCG00013735
AMCG00013736 mRNA downstream 275262 40663585 ~ 40665746 (+) True AMCG00013736
TU57778 other upstream 4572 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 815432 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 1555779 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1812738 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 2004534 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 2039778 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2039778 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2039778 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2256664 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 2651661 43039984 ~ 43044436 (+) True G46840

Expression Profile