RNA id: AMCG00013753


Basic Information

Item Value
RNA id AMCG00013753
length 2101
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00013753
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41467032 ~ 41483376 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCATAGGTAAATTACAGCTCCACACACAGATAACAGAAGTCATGTGACCTCTCTCAGCCGTGCAGGGTAAAGGTAGATTTACAGTGCCAGTGGATTTGGATTATGGAGGATTGCTGAAAAACACTCAAGTAACGGTCTGGtctgggtatatatatatatatatatatttgtatgttttggtAACTCTTCTGTTTTAAGACTTGACTCGGAGAAGACGCAGACATGTCGTTCAGTCGGAAGAATTGGTCTGCGCTTTCAAGTCTAACTCGCCAGTGGACGGTTGAGGATGAGGAGGAAGTTGAGCgtgagaggaggagaaggattAGAAACAGCACTGTATTTGATCCCTCTGACTCAAGCCAAGATGACACAGCCCCGCAACCAAACAGTGCTGGGGACGACTCTGGTACTGAAGACCAAACCAACTTGGAATTTCTAGAGATTCTGAAGTCGAGGGATGAGCGGAGGAAGAAGAGACACGTGGAGACACTTTGGCAGCAACGAGAGGAGGAGATGCCGGAAATGGGTCAGGAAGCTGAGGACAAGGGGCAAGAGGACAGGCTGGGGGGAAAGGAACTGAAGGCTGAGACACAGAGGTGTGAGCTGAGGAACTCCACTACATCAGTCAAAAACAGCaATGGAAATGTTGAGTCCAAGACCAACCAAGAAACAGACAAAGAGTCCCCGAGCAGATCATCTAAGGTTTTCAAGAGCTCGCTCTCCTTCTCTTTAGATAAGACCCCCACGTCCCCCACTGGAAGAGTCATCTCCCCCTTGAGTCCCACCAGCCCACCAGGGCAGGGATTGACACACAGCCCAAGGTGGTCCCAGGAGATAAGAGAGAATGGAGACAACCAGtttacGAGAAGCTCTGAGCAGCCTGGGGAGAGTCCAATCAAGCATCAGAGCCCCAGATCCTCCTCTTTCAGGataaagacaaagacagagGAGACAACTGTTCCAGTCAAGAGGAGTGCCAGTGTCAGAATGACTTCAAGGACCATCGAAGACAAACTCAGCAAGGCACCAAACCACGAAGACGACAAACCCTCCCCGTTTCAAAGAAACTCCAGACAAAGAATTTCCTCTCGCACCATTGAGGAGAAACTGGAGAGACTAGCTATGGCAGCGCAGaaatcCGAAACTCTAAAGTCTTCTGTTCAGAAAGACTTCTACCTGCTGGTGGACGAAGTGGCAAGGAAAAGAGGGGACTTCAGGAATGTCGACATCTCCAGCCAGCGAAACATCTGGGAGAGCAAAACTGAGGAGCTTCCTCCAAAACCCTCATCTTATAATAAAGTCCAGAAGTAGTGCCCCCACCCTGTTTTAGTAAGTGCTAAAGACTGCCCATTCAAGCTCTGGATATATTACTCAACTAATGAGAAGATGTGTACCTTATTTACTCATGGTTTATGTTTGTACTATATGAACAAAACTTTACACAACATCAAAGTAACTCAGGCACTGGTAGTCTTCTGGTACATATTaaggaaagcaattaaaattattctagTCTcatcacaaaaatatgaatgagacacccatgtgtgttttttgtatttttttttctttgacattttcttttaaatactgCTCTTAACTGTCTTTTATGCATAGTCTATTTTAAatctattctttatttttatttttggtgtatGTATCTTGTCTTGcaggacatttttttattaatttgtgaagAAACATGCAAACATTTCCAGCAGTCAGAAATCCAGTGTTCAGGGTTTATCAATGTGGTCTTTTCATTATTACATGGTACTGCTATATCTGTGGTCAAGATCTGTAACAGAGGttgtaattcaaattattatttgcagGTTGAATTAGCAAACTCAATGTACTGCTTATTAGGGGATAATTATGAATAGACAAGCTTTGCATTCAGTATGACttcatgatttttaaacatgcttATTTGTGTTTCCTCCAGAATCCTGTTCTTTACAATGGTGCCCATCTAGGTTTAAACATTAAACCAATTTTTCTATAGCTGTGCATGGTTCTATTTTTTTCGTTTGCAAATTAACTTCCTGTTTTTAACTGGTATTGTCACATAATAAACCATCATTTGAAACAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58024 lncRNA upstream 53432 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 262883 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 581403 40882849 ~ 40885629 (+) True G46455
TU57796 lncRNA upstream 1041525 40416632 ~ 40425507 (+) True G46360
TU57791 lncRNA upstream 1054360 40391888 ~ 40412672 (+) True G46355
TU58160 lncRNA downstream 361932 41845308 ~ 41893174 (+) True G46652
TU58217 lncRNA downstream 1012370 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 1166814 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 1208830 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 1210286 42693662 ~ 42695623 (+) True G46734
AMCG00013754 mRNA upstream 4076 41453187 ~ 41462956 (+) True AMCG00013754
AMCG00013757 mRNA upstream 42697 41416140 ~ 41424335 (+) True AMCG00013757
AMCG00013746 mRNA upstream 269369 41176661 ~ 41197663 (+) True AMCG00013746
AMCG00013744 mRNA upstream 295093 41154019 ~ 41171939 (+) True AMCG00013744
AMCG00013745 mRNA upstream 332367 41130711 ~ 41134665 (+) True AMCG00013745
AMCG00013758 mRNA downstream 936 41484312 ~ 41504467 (+) True AMCG00013758
AMCG00013760 mRNA downstream 66050 41549426 ~ 41552570 (+) True AMCG00013760
AMCG00013756 mRNA downstream 90602 41573978 ~ 41587939 (+) True AMCG00013756
AMCG00013755 mRNA downstream 111441 41594817 ~ 41604943 (+) True AMCG00013755
AMCG00013759 mRNA downstream 138388 41621764 ~ 41637225 (+) True AMCG00013759
TU57778 other upstream 1093872 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 1904732 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 2645079 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 2902038 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 3093834 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 944725 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 944725 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 944725 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 1161611 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 1556608 43039984 ~ 43044436 (+) True G46840

Expression Profile