RNA id: AMCG00013754


Basic Information

Item Value
RNA id AMCG00013754
length 1650
RNA type mRNA
GC content 0.40
exon number 7
gene id AMCG00013754
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41453187 ~ 41462956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cggctgtgtgtcagtgcaggaGAAATCTGCTGCTTCTATTAATACCACCCAGTGACGAGCAAGGGAGACAATGGGAACCGGGGTTAAATAGTCCGGGAGCATTCTTTCACTGCATCTTTGTTCTGTCTGCTGCCTGTCCTCTCCGCTGCACATAAAGTCTGAACCTCCTCTGCCAAAATGCCGGAGCATGTCCAGAGAAAGTCCAAGATTACTGCTTCACGCAAGCTTATGCTAAAGAGCTTGCTGTTGGCAAAGGCTAAAGAGGAGTTGGAACAGGAGATTGTGGacaaagaggaggagaaggagagataCCTGAATGAGAGGGTGCCACCACTGCGCACCAGTGGAATGTCCTTACGTGAGCTTCAGGAGCTGTGCCAGGAATTGCATGCTAAGATTGACGTAGTGGATGAGGAGCGATATGACATTGAGGCTAAAGTCATTCACAACACCAGAGAGGAGAGACCTGTGGAGGTGGGAGACTGGAGGAAGAATGTGGAGGCTATGTCTGGGATGGAGGgcaggaagaaaatgtttgatgcTGCAAAAACGGCCCCACCGCAGTAAGAAGataaTCTGAAGGAATTGAATACGGACTTGAATTTACACCTGCACATCTGCTAGTATTTTTAACAATCAGTGgtgatacatttcatttttcagtgtctattttattttttccataaacaTGTGATCTTAAATTTATGACAAAGAATTCTGGAAATGCTTTAACAAAATCCATTGGTCCTCTTGTCAATTCCATCAAGCAAGGATTTTTATGTAAcccagtgtttttgttgttgtttaacatTTCTGCTCCTATAATTCCTCGGATAGGACTGAGGACTGAATGTTTGAGTTAGAGGCTATTCTACCCGTTTGTGATTTGGTAGGGGCCCTCTGTAAAACTGACTGTCCAACTTTCATGTGAGTTCAATAGACCTTCCTTTTCATATGACATGGACATGTGTAAAATCTGATGTTTATAATTTTTGAAAGAACCAAGTGCCATTCTGTGTGCATTTTGCCTGCCAAGTGTGAGGTATGCAGTAGAATCAAAGGCTCTGTAGTCTTCTAATAAAGTGCACGTCAATacagcatttgaaaaataattgtaatcttTGAGTTGCTCTTCTAGGGTTaaagctaaaacaaacaaatatggaaCCCCACcccaacaaaataatacaaatgtaatgattataCAAAATTAAGACTTGGAAGCTTTTTCCAAATAAATCCATTGCCTTTGATCTATTCTGaaagtttttttctgttgataGCTGGTATTGATTGATCTAGATAGCTAAATAGTTTCCTGGTATGCCCCTAGAAATGAGGTATGtgaaatttactttttaaaggtGGTGGTTCAGATAAGAGATctagtaaaaatgtattgtatttgaaaattagCTGACACATACAATTTTTCCATGATCCCCAAACTCTCTTTATCATCAGAGATTCATGGTCTATGTCAGCTTTTAAAGGAATTCTATATACATGTTTTCCCTCTAAAAAAAGTGTTAACCTCTCTTGCTTTCAGATTGCCTACACTAATAAAACAGTTAGGCACTAGATGTGTCTTTAAAGGTGACCGCCAACTTGTAGAATGCAAACAAGGCAATAAACGAAGCTACACATGCC

Function

GO: NA

KEGG:

id description
K10371 TNNI1; troponin I, slow skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58024 lncRNA upstream 39587 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 249038 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 567558 40882849 ~ 40885629 (+) True G46455
TU57796 lncRNA upstream 1027680 40416632 ~ 40425507 (+) True G46360
TU57791 lncRNA upstream 1040515 40391888 ~ 40412672 (+) True G46355
TU58160 lncRNA downstream 382352 41845308 ~ 41893174 (+) True G46652
TU58217 lncRNA downstream 1032790 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 1187234 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 1229250 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 1230706 42693662 ~ 42695623 (+) True G46734
AMCG00013757 mRNA upstream 28852 41416140 ~ 41424335 (+) True AMCG00013757
AMCG00013746 mRNA upstream 255524 41176661 ~ 41197663 (+) True AMCG00013746
AMCG00013744 mRNA upstream 281248 41154019 ~ 41171939 (+) True AMCG00013744
AMCG00013745 mRNA upstream 318522 41130711 ~ 41134665 (+) True AMCG00013745
AMCG00013743 mRNA upstream 351926 41090717 ~ 41101261 (+) True AMCG00013743
AMCG00013753 mRNA downstream 4076 41467032 ~ 41483376 (+) True AMCG00013753
AMCG00013758 mRNA downstream 21356 41484312 ~ 41504467 (+) True AMCG00013758
AMCG00013760 mRNA downstream 86470 41549426 ~ 41552570 (+) True AMCG00013760
AMCG00013756 mRNA downstream 111022 41573978 ~ 41587939 (+) True AMCG00013756
AMCG00013755 mRNA downstream 131861 41594817 ~ 41604943 (+) True AMCG00013755
TU57778 other upstream 1080027 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 1890887 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 2631234 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 2888193 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 3079989 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 965145 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 965145 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 965145 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 1182031 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 1577028 43039984 ~ 43044436 (+) True G46840

Expression Profile