RNA id: AMCG00013756


Basic Information

Item Value
RNA id AMCG00013756
length 1883
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00013756
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41573978 ~ 41587939 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCTTCAGTCCATTTTCACAGTCACCCTGAGCTGTGGGCTTGGGGAAGACTCTGCTGGCTGGGAGTATCTCTggtacagagacacacagggaacaGCACTGCCCAACACTGACAGCAGCAGGACTGATGGGTCCAGTTACGCCATCAGCCAGGCGGCTCTGTCCCACACTCTACCACAGCCTGTCCTGACCCTGGAGTCTGGATGGACAGAGATATTCACCACAGAAAGAGTGACTCTGAAATGTGAGATTCAGGGCAGCTCTACTGAGTGGATCTATAAATGGTACAGAGATGGACAGGAGCTTCCTGTTGACAAGACTGACTCCAGCAGTAGAGATGGAGACAGATACAAAATCCTCAATGCTGCTCTGTCTCACACTCGACCTCAGGCTGTCCTGACCCTGGAGTCTGAATGGACAGAGATGTTCACCACAGAAAGAGTGACTCTGAGGTGTGAGATTCAGGGCAGCTCTACTGAGTGGATCTATAAATGGTACAGAGATGGACAGGAGCTTCCTGTTGACAAGGCTGACCCCAGCAGTAGGGATggagagaaatataaaattCTCTTTGCTGCTCCGTCCGACAGTGGGCAATATACCTGTAGAGGGCAACATAAGAGAAAGTACATCTACACTAGAGACAGCCATCCTGTTACACTGAAGGTATCTGCTACCAGCCCAAAGCCCCTCCTGACCCTGGACCCCCCCAGTGCAGAGATATACACAGGAGACAGAGTCACCCTGAGCTGTGGGCTTGGGGGAGACTCTGCTGGCTGGGAGTATCTCTggtacagagacacacagggaacaGCACTGCCCAACACTGACAGCAGCAGGACTGATGGGTCCAGTTACACCATCAGCCAGACGGCTGTGTCCCACAGTGGACAGTACTGGTGTCGAGCTACAAGGGGCAGGGTGTCCTTTCACTCTCAGTACAGTGATGCTCTGACATTAGACATATTAGCTCGACCTCAGGCTGTGCTGACCCTGCAGTCTGGATGGACAGAGATGTTCACCACAGAAAATGTGACTCTGAGGTGTGAGGTTCGGGGCAGTGATATAGAGTGGAACTACACATGGTACAGAGATGGACAGGAGATTTCTCAAGACAGCACTAAAGTCAGTAGTGGGACGAGAGAAAGATACGAATTCAATTCTGCAGTTGAATCACAGAAAACGGAATTCAGCTGCAGAGGGGAAAGGACAACCAAACCAACTTACTCTTTAAAGAGTGACATTCTTGTACCAAGAGATATCAAACCGAAGAGGAAACCACAAGATGACCTGTTTTTTACAAGAgcagaaatgaaaatcaaagaCCCAGATTTACATGACCAGCTGAACAAAGGTACCGACTCTCCCACTGAAACCAAAAGTAGTCCACAAACTTCAGAGGAAGCTGAATTGCAATCAATCATCAATTCAAACCAAGTTGCTGGGGAAAACATTGAAGAGAATATGCAGATGCTTTCTTCATTCACAGGATCATGAGGAACAATATCTTATTGCACCATGAAATGtgacatgaaaatgaaagaaatattttaaatgagactATCATCTATCAAGGCAATGTGGATTTTCTCACTTACTTTTTGTTAAATTTCATCAATCCCCAACTGTAAGACTATTCTTTAATGGTGGATTTGCCAAATGTGACTTCAGTCTAATCCATGATGATTTACCATGATGTATGGAAATTATGATTTGCAAACTGGTAGGTGGTTCAATGTGTTAATATTATCCAGgaattaatttcttattttgcttttcaaaatgccaTGTTTGCATAATGAACAGAATGTAGTTGAGCAgcctatatttaaataaacactttaaaatatagtttgtaAATAAAGAACTGCTTGAACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58024 lncRNA upstream 160378 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 369829 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 688349 40882849 ~ 40885629 (+) True G46455
TU57796 lncRNA upstream 1148471 40416632 ~ 40425507 (+) True G46360
TU57791 lncRNA upstream 1161306 40391888 ~ 40412672 (+) True G46355
TU58160 lncRNA downstream 257369 41845308 ~ 41893174 (+) True G46652
TU58217 lncRNA downstream 907807 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 1062251 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 1104267 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 1105723 42693662 ~ 42695623 (+) True G46734
AMCG00013760 mRNA upstream 21408 41549426 ~ 41552570 (+) True AMCG00013760
AMCG00013758 mRNA upstream 69511 41484312 ~ 41504467 (+) True AMCG00013758
AMCG00013753 mRNA upstream 90602 41467032 ~ 41483376 (+) True AMCG00013753
AMCG00013754 mRNA upstream 111022 41453187 ~ 41462956 (+) True AMCG00013754
AMCG00013757 mRNA upstream 149643 41416140 ~ 41424335 (+) True AMCG00013757
AMCG00013755 mRNA downstream 6878 41594817 ~ 41604943 (+) True AMCG00013755
AMCG00013759 mRNA downstream 33825 41621764 ~ 41637225 (+) True AMCG00013759
AMCG00013761 mRNA downstream 176805 41764744 ~ 41787394 (+) True AMCG00013761
AMCG00013770 mRNA downstream 840838 42428777 ~ 42446480 (+) True AMCG00013770
AMCG00013771 mRNA downstream 889732 42477671 ~ 42487364 (+) True AMCG00013771
TU57778 other upstream 1200818 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 2011678 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 2752025 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 3008984 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 3200780 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 840162 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 840162 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 840162 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 1057048 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 1452045 43039984 ~ 43044436 (+) True G46840

Expression Profile