RNA id: AMCG00013757


Basic Information

Item Value
RNA id AMCG00013757
length 777
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00013757
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41416140 ~ 41424335 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATAGACCCGCCCTCTTCACTGGTGTGGTGTGCAAAAGTGTGACTCCACTGGTCTCTATTAAACTGGGGAAGCTGTGCAGCCCAGAGGTGCCACTCCTCACAACAGCTGGAGATACACAGCGACAGCCGAGAGACTGCCCAGGGACTCCAGACACTTTAGCTTCCAATCTCATCACTGCATACAGGAATCTTAGTCTGCTTTGTTTTCCACACAGGATGCCTTTTGGGGGAGGAAATAAGTGTGGCCTGTGCCAGAAGACGGTGTATTTTGCCGAGGAAATGCAGTGTGATGGCAAGAGCTTCCACAAGTCATGCTTTCTGTGCATGGTGTGTAAGAAAAACCTGGACAGCACAACTGTGGCAGTTCATGGAGACGAAATCTTTTGCAAGGCTTGCTATGGCAAGAAACATGGACCAAAAGGCTATGGTTATGGACAGGGCGCGGGTACACTGAGCATGGACAAAGGGGAAGGCCTGGGTATCAAATCTGAAGACCCTATGCCCCACCGCCCCACCACCAACCCCAACCCTTCGAAATTTGCTCAGAAGCTGGGGAACTCCGAGGTGTGCCCACGCTGCAGCAAGTCGGTCTACGCAGCAGAGAAAGTAGTCGGAGCTGGAAATGCCTGGCACAAGAGCTGCTTCCGCTGTGCAAAATGTGGGAAGGGCCTGGAGTCCACCACCTTGGCAGACAAGGATGGAGAAATTTACTGCAAAGGTATCAATCTTCACTCACACAAAGACTATAACTGTGCCTGttgccaaaaaacataa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58024 lncRNA upstream 2540 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 211991 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 530511 40882849 ~ 40885629 (+) True G46455
TU57796 lncRNA upstream 990633 40416632 ~ 40425507 (+) True G46360
TU57791 lncRNA upstream 1003468 40391888 ~ 40412672 (+) True G46355
TU58160 lncRNA downstream 420973 41845308 ~ 41893174 (+) True G46652
TU58217 lncRNA downstream 1071411 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 1225855 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 1267871 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 1269327 42693662 ~ 42695623 (+) True G46734
AMCG00013746 mRNA upstream 218477 41176661 ~ 41197663 (+) True AMCG00013746
AMCG00013744 mRNA upstream 244201 41154019 ~ 41171939 (+) True AMCG00013744
AMCG00013745 mRNA upstream 281475 41130711 ~ 41134665 (+) True AMCG00013745
AMCG00013743 mRNA upstream 314879 41090717 ~ 41101261 (+) True AMCG00013743
AMCG00013741 mRNA upstream 374211 41040141 ~ 41041929 (+) True AMCG00013741
AMCG00013754 mRNA downstream 28852 41453187 ~ 41462956 (+) True AMCG00013754
AMCG00013753 mRNA downstream 42697 41467032 ~ 41483376 (+) True AMCG00013753
AMCG00013758 mRNA downstream 59977 41484312 ~ 41504467 (+) True AMCG00013758
AMCG00013760 mRNA downstream 125091 41549426 ~ 41552570 (+) True AMCG00013760
AMCG00013756 mRNA downstream 149643 41573978 ~ 41587939 (+) True AMCG00013756
TU57778 other upstream 1042980 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 1853840 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 2594187 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 2851146 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 3042942 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 1003766 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 1003766 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 1003766 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 1220652 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 1615649 43039984 ~ 43044436 (+) True G46840

Expression Profile