RNA id: AMCG00013758


Basic Information

Item Value
RNA id AMCG00013758
length 1163
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00013758
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41484312 ~ 41504467 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAACAGCCACTTGGgttataaataaagacaatagGAACACCTCAATCACTCTGACAGAACCCCACCATGACATCTGAGGGCCTGTCACATGATTCTGAGATGTTTTTAAAGCGTATGATTTTTCAGGAGCTTTCACACAAGCTGGAGGATCACTATTTTCTCAAGTCTCTCTTACTTCAGAAGTTCCTGAAGAGGCGGCAGAGGAAGCCACAGcaggggaagaggaggagaaggagaccACACAGGAAAATGacGCTGGAGAAGAACATgaaggaggagGATATCCACCGAAAACGCATGGAAAAAGATCTAAACGAGCTGCAGACCCTGATTGAAGCCCACTTTGAGAATCGCaagaaagaggaggaagaaCTCATCAGCCTAAAGGACCGGATTGATCAGCGTCGGTCTGAAAGAGCCGAGCAGCAGAGGATacgtgcagagagagagaaagagcggCAGAACAGAGTGGCTGAGGAGAAAGCAaggaaagaagaagaggagaacAAGAAGAGAGCCGAAGAAGAtgccaagaagaagaaaacccTCACTAGTATGCATTTCGGAGGTTATCTTCAGAAGACTGAGAGACGGAGTGGAAAGAAACAGACtgagagggagaagaagaagaaaatcctGGGCGACCGCCATAAACCACTGAATATTGATGACCTGAGTGAAGAAAAACTGAAGGAGAAGGCAAGGGAGTTGTGGGAAAAGATCTACCAATTGGAAGCTGAGAAATTTGACCAGCAGGACAAATTCAAGAAGCAGAAGTATGATATTAAGGTTCTGAGAAACCGAGTTAGCGACCACCAGAAAACTTGTAAAGGGGGACGAGCAAAGACTAAAGGTGGTCGATGGAAGTAGCAAAGTACACAGTCCTTTGCCTTGGATTCTTTGTGGAAGTCTGCCAGAGTGCCACTGAACCCCAGCCTCCAATGTCCCTCCACATACTCTGAGAGAAGGGCATCATATTGCAGTGTGAATTTCACTAGTTGAGCCAATTCTTGTCTTGTCAGTGCTCGCTTTGCTACTTTCTAGTGTTATACTGCCTTGttgttatgttatgttgttatgttctttacccattcattaaaatatccctgtaaataaaagcacacaataATGCCCAATAAACTGTGCCAATAAAAATTGTAAA

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0048793 pronephros development biological_process
GO:0055009 atrial cardiac muscle tissue morphogenesis biological_process
GO:0055010 ventricular cardiac muscle tissue morphogenesis biological_process
GO:0048845 venous blood vessel morphogenesis biological_process
GO:0045214 sarcomere organization biological_process
GO:0010749 regulation of nitric oxide mediated signal transduction biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0060840 artery development biological_process
GO:0005861 troponin complex cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0005523 tropomyosin binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58024 lncRNA upstream 70712 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 280163 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 598683 40882849 ~ 40885629 (+) True G46455
TU57796 lncRNA upstream 1058805 40416632 ~ 40425507 (+) True G46360
TU57791 lncRNA upstream 1071640 40391888 ~ 40412672 (+) True G46355
TU58160 lncRNA downstream 340841 41845308 ~ 41893174 (+) True G46652
TU58217 lncRNA downstream 991279 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 1145723 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 1187739 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 1189195 42693662 ~ 42695623 (+) True G46734
AMCG00013753 mRNA upstream 936 41467032 ~ 41483376 (+) True AMCG00013753
AMCG00013754 mRNA upstream 21356 41453187 ~ 41462956 (+) True AMCG00013754
AMCG00013757 mRNA upstream 59977 41416140 ~ 41424335 (+) True AMCG00013757
AMCG00013746 mRNA upstream 286649 41176661 ~ 41197663 (+) True AMCG00013746
AMCG00013744 mRNA upstream 312373 41154019 ~ 41171939 (+) True AMCG00013744
AMCG00013760 mRNA downstream 44959 41549426 ~ 41552570 (+) True AMCG00013760
AMCG00013756 mRNA downstream 69511 41573978 ~ 41587939 (+) True AMCG00013756
AMCG00013755 mRNA downstream 90350 41594817 ~ 41604943 (+) True AMCG00013755
AMCG00013759 mRNA downstream 117297 41621764 ~ 41637225 (+) True AMCG00013759
AMCG00013761 mRNA downstream 260277 41764744 ~ 41787394 (+) True AMCG00013761
TU57778 other upstream 1111152 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 1922012 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 2662359 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 2919318 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 3111114 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 923634 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 923634 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 923634 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 1140520 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 1535517 43039984 ~ 43044436 (+) True G46840

Expression Profile