RNA id: TU58195


Basic Information

Item Value
RNA id TU58195
length 1857
RNA type TUCP
GC content 0.44
exon number 5
gene id AMCG00013770
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42428101 ~ 42446480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAGATCCCCGAGAGGGAACCTCCTTAAAGCGCCCTAACCCTGCCCCTGGCTGGcgctttttatttcatttggaGGACACGGCACGCTATTTTTAGCACACGTTGGATCGGGTCCAGGACctgctacattttttttaatttggtaattttttttccctttcccctctctctccattacttcctctgtgtgtctcacttctgaaaaaaaaagctgaggTTTTTAAAGGGCTGGGTTAGTGTGCTTATTTCCTTAGGCTTGTATCTACTGTAGCTGCTGGTGAAGCCAGGCTTTAAACCGGTCAGGCAGGCAAGGAAGCAAGGCTgcaagcaggcaggcaggcaggcaggcagggaggcCGGCCAGACTAGCAGggagcttttttgttttaatttaatcagagGACATTATccagggggggtgggggggacgaAAAAGACAGCCGTGCTGAATTCCCTGCTTCGGTGCCTGTTTGTGTTTGCGAGCGTTAAACCGGCCTTGCTCGTGTAACAGACGGACAGACTGAAAAATGAGCGATTCAGGTTCAAAAGGCAACCAGTCTTTGTCTCAGAAAGATAAGGATGGAGctgagaagagagggaggggaagacCAAGGAAGCAGCCACAGCTAAAGAGCCTTGAAGAACCCAGTGGATCCCCGTCTCCAAAGCGGCCTCGGGGAAGACCAAAGGGCAGCAAAAACAAGAGCACAGTCAAGAGCAAAAAATCGACAGCGTCTGCAGGGGGAAAACGCAGGGGACGACCCAAGAAAGCGgagaaggaggaggagcagggatCCCAGGAGTCTtctgaagaggaggaggaagaggagcagtGAACCGTTTGCAACCCGCACTACCTCATAACTCAACTTACTGACTTCCTGTCAACAAGAGCTGGACTGAAACTCCGATACAAACCAACATAGTCGCCACCCTTCCCTTCCTGCCCTTCCCACCCcacaccccctcctcctcttaACCGCCTCCTGGCAAAATGGGGAGTTGAACACATTTCATCCACCTGCTATCTGTAACAGcactggaaaacaaactgacattgtgagagagagagagagagagagatctatatatatatatatatatataaatatatatatgaatattacaAACTGGTGACTTACCGTTTAGTTTCATAATGGGTTTTTGGGTATTACACAGTGGTCTTTTATACTGGACAAAGGTGAATTTATGTTgcctacaaaaatgtattttctttgtgtgtgtgtggagtggtAATTCAAAAGATGATCCAATATCCCTCATACCCAACTGAAGGTTAAAGGATTCATAGTGTGCAGCCAGTTGGGCATATTTTagtacagattttattttttgctgttaaactgtcatttttatttcttagagGCTTTTTCCATATTGTGTAGAATCATTTTTCAACcctaaccccccaccccaaataCTTCAATTctattttaagtaaatacaatgtaaCTACAATGCTGAATAGTAACTAAAACTGTTCAAAGAAACCAGTTTAAAAGTTGATGCGTTTAAAGAATTGTCATTAGGATTCTTAAAGGGGATGCTCATTTATGGGGGTGATGGAGGCTACACTTGTGGAGGGGTCTGATGTTTTTGACTTGTTAGGaatgtacctttttttttaatgttgatatTGGATGTACTGAATTAAAGAAATTGGATGTTGTCTTTGGGGAACTAGAGCTCTTCCTGGGATCAGGCTTTTGTGTGCTCTCTGGCTTCAAAGGGTACTGACCAGACTCCTTCCCCGGGACAAGGCAAGGCTGAAAGGCGCTGTGGGTTTACTGTTGcagaattaattttaatctggtgccatttttaataaaagagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58160 lncRNA upstream 534927 41845308 ~ 41893174 (+) True G46652
TU58024 lncRNA upstream 1014501 41413360 ~ 41413600 (+) True G46538
TU57981 lncRNA upstream 1223952 41203064 ~ 41204149 (+) True G46508
TU57909 lncRNA upstream 1542472 40882849 ~ 40885629 (+) True G46455
TU57796 lncRNA upstream 2002594 40416632 ~ 40425507 (+) True G46360
TU58217 lncRNA downstream 54501 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 208945 42650190 ~ 42654992 (+) False AMCG00013777
TU58253 lncRNA downstream 250961 42692206 ~ 42692546 (+) True G46730
TU58257 lncRNA downstream 252417 42693662 ~ 42695623 (+) True G46734
TU58277 lncRNA downstream 262411 42703656 ~ 42792219 (+) True G46739
AMCG00013761 mRNA upstream 640707 41764744 ~ 41787394 (+) True AMCG00013761
AMCG00013759 mRNA upstream 790876 41621764 ~ 41637225 (+) True AMCG00013759
AMCG00013755 mRNA upstream 823158 41594817 ~ 41604943 (+) True AMCG00013755
AMCG00013756 mRNA upstream 840162 41573978 ~ 41587939 (+) True AMCG00013756
AMCG00013760 mRNA upstream 875531 41549426 ~ 41552570 (+) True AMCG00013760
AMCG00013771 mRNA downstream 36426 42477671 ~ 42487364 (+) True AMCG00013771
AMCG00013774 mRNA downstream 114563 42555808 ~ 42569579 (+) True AMCG00013774
AMCG00013777 mRNA downstream 213747 42654992 ~ 42661844 (+) True AMCG00013777
AMCG00013776 mRNA downstream 224037 42665282 ~ 42689203 (+) True AMCG00013776
AMCG00013780 mRNA downstream 277448 42718693 ~ 42723943 (+) True AMCG00013780
TU57778 other upstream 2054941 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 2865801 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 3606148 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 3863107 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 4054903 38370656 ~ 38373198 (+) True G45894
TU58242 other downstream 203742 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 598739 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 646044 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 997247 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2593527 45034772 ~ 45095669 (+) True AMCG00013838

Expression Profile