RNA id: AMCG00013785


Basic Information

Item Value
RNA id AMCG00013785
length 606
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00013785
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42842575 ~ 42866909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTAATTCAGAAACCCTTTGCAGGAACAAGCCAGAGCGCAGACTGTGTGGGAAAGGCTCTGATGTGAAAACACTGTGCAAACGAGACTTGCAGAAGAATGACATATACCTGGAAAACGGGCTGGCATTTTTcagcggggggcggggggggcagtGGAGTTTCATCACGGTGGCGGATGTTGATGAGTGTGCAGAAGCATTGGATAACTGTAACATCGATGCAATCTGCCAGAATACCCTGAAGTCATATAAATGCATCTGCAAGTCTGGCTACACGGGAGACGGCAAGCACTGCGAAGACATCGACGAATGCGAGACTGATTACAACGGCGGCTGTGTGCACGAGTGCATCAACATCCCGGGGAACTACAGATGCACCTGCTACGATGGCTTCCGGCTGGCGCACGACGGACACAACTGTCTGGtcctcAGCACCAGGCAGACGGTGTGTGTTGACAGGGCCCTGGGTGTTTGGCGAGCGCGGTGCCAACACCCCAGCAGGGCCCTGTGTGGACTTGCACTGCCGAGCATCTGGAAGGGCTCCCTCTCTGGGAGTTTCCCCGGCTCTGTCGTGCCGCGGAGCTCCGTGTTTGTGCAGCTTTGA

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58277 lncRNA upstream 50356 42703656 ~ 42792219 (+) True G46739
TU58257 lncRNA upstream 146952 42693662 ~ 42695623 (+) True G46734
TU58253 lncRNA upstream 150029 42692206 ~ 42692546 (+) True G46730
TU58243 lncRNA upstream 187583 42650190 ~ 42654992 (+) False AMCG00013777
TU58217 lncRNA upstream 342976 42495746 ~ 42499599 (+) True G46701
TU58345 lncRNA downstream 110703 42977612 ~ 42980239 (+) True G46798
TU58364 lncRNA downstream 131830 42998739 ~ 42999135 (+) True G46814
TU58418 lncRNA downstream 219481 43086390 ~ 43086600 (+) True G46861
TU58474 lncRNA downstream 483944 43350853 ~ 43352415 (+) True G46905
TU58521 lncRNA downstream 565467 43432376 ~ 43452015 (+) False G46940
AMCG00013783 mRNA upstream 28432 42785427 ~ 42814143 (+) True AMCG00013783
AMCG00013782 mRNA upstream 104354 42733545 ~ 42738221 (+) True AMCG00013782
AMCG00013780 mRNA upstream 118632 42718693 ~ 42723943 (+) True AMCG00013780
AMCG00013776 mRNA upstream 153372 42665282 ~ 42689203 (+) True AMCG00013776
AMCG00013777 mRNA upstream 180731 42654992 ~ 42661844 (+) True AMCG00013777
AMCG00013786 mRNA downstream 26357 42893266 ~ 42936143 (+) True AMCG00013786
AMCG00013787 mRNA downstream 70092 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013791 mRNA downstream 198427 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013799 mRNA downstream 237225 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013803 mRNA downstream 412222 43279131 ~ 43282004 (+) True AMCG00013803
TU58242 other upstream 193821 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 401330 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 401330 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 401330 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2469415 40350652 ~ 40373160 (+) False G46345
TU58393 other downstream 173075 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 220380 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 571583 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2167863 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2459749 45326658 ~ 45360882 (+) True G47206

Expression Profile