RNA id: AMCG00013786


Basic Information

Item Value
RNA id AMCG00013786
length 6794
RNA type mRNA
GC content 0.46
exon number 22
gene id AMCG00013786
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42893266 ~ 42936143 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggggtcaaagGGGAAGGAGGCCATTCTCAAGCAGACAAGCCACAGCCTGAAGAATGGGGCCcagaaaatgcacagaaaaacacatggcAAGGTTGTGGGTGTGGGTGAGGCACCTAGCAAAGGAATGAACTGTATGAATAAGAACCATGGCTGTGCGCACATCTGCCGAGAGACGCCCAAAGGAGGGATCGCCTGCGAGTGTAGGCCAGGATTCCAGCTCACCAAGAACCAGAGAGACTGCAAATTGACGTGTAACTACGGCAATGGAGGCTGCCAGCACACCTGTGAGGACACGGACCAGGGGCCCAAGTGTGGCTGTCACATGAAGTTCGCCCTGCACTCCGACGGCAAGACCTGTGTAGGGGAAAGAAGTGTCCAGCAGCAGGCAGCCCCCCAGCTGTTACCCAATGAGACCTGCGCGGTGAACAACGGCGGCTGTGACAGCACGTGCCACGACGCGGTGACGGGGGTGCGCTGCAGTTGTCCGGTGGGCTTCACCCTGCAGCCTGACCGAAAGACCTGCAAAGACATCGACGAGTGCCGTCTCAACAACGGCGGGTGCGACCATGTGTGCCGTAACACAGTGGGCAGCTTTGAGTGCAGCTGCAAAAAGGGCTACAAACTGCTGACCAACGAGAGGACCTGCCAAGATATCGACGAGTGTTCGTTTGACAGGGCCTGCGACCACTCCTGTGTCAACTCGCCGGGCAGCTTCCAGTGCTTCTGCCACAAGGGCTATGTGCTGTACGGACTGGCCCACTGCGGAGATGTCGACGAATGCAGCATCAACCGAGGGGGCTGTAAGTTCGGCTGTGTGAACACCCTGGGCAGCTACGAGTGTACCTGCCCGCCCGGCTACAAACTGCACTGGAACAGGAAGGACTGCATCGagCTGGTGAAGTGTACGTCCAGTTGGGTCTCTCCCAAGGCCACCCTGACTTGCAGCAAAACGGGCAAGAAAGAGAGCTGCTCTCTCACCTGTGCCTCCAAGGCTCACTATCTGGCAGAATCGGATAACAGCTACACAGTGAGCTGTGGCATCCCGATCCTACGCAGCAAGATGCCCCCCCGAGTGAACAGCAGCAACGCACAGACCTGCATAGAGACTCTGGCCCCTCCAGTGAAGCACAAAGCCTCCTTCAAGATCAAGGACGCCAAGTGCCACCTGCACCCGAAACTGAAGGCCCGGCAGGAGGAGGCGGGGCGCCAGCTGGGGCCAGGGGGTGGGCAGCCCTGCAGTGACTGCTTGGTCACCTTCGTCAACCTCAAGTGCGACTCCTCGAAGAAGGCCAAGGGGCGACGTGCTCGCAACCCCGCCAACAAGGAGGTGACCAGGATCACCCTGGAGCTGGAGGCCGAGATTAAGCCGGGGGACACCACAGGAAGCTGCAATCTCAACTGCCTGAGGCAGCGCATGGAGAGGCAGGTGAAGGCCTATATCAAGGCCCTGAAGAAGTCCATCAACCAGGAGCGCTTCCTGATTCGTGTGGCCGGGCTAGAGTATGAGGTGGCGCAGAAGCTGGCGCGGGCGGCGGAGCGGCAGGAGAATTGCGGGCCTGGCCGGGAGAAGGACAGCGGCCGCTGTGTCAGATGTTTGCCCGGCTCCTATTACCACGGGGAGCAGGAGCGCTGCCTGCCCTGTCCGCCCGGCACCTTCCAGGAGAGGGAGGGGCAGCTGGCCTGTGACCTGTGTCCTGGAAGTGAAGGGCACGGGCCATCTGGTGCCCGCAATATAACATCCTGCGCAGGCCAGTGCCCGACTGGGTATTTCTCCAGCGACGGCTTCAAACCCTGCCAGGCTTGTCCTCAAGGCACCTACCAGCCAGACCCCGGCCGCACCCTGTGCTTCCcctgtgggggggggctgaGCACCAAGCGGGATGGCTCCAGCTCCTTCCACGACTGTGAGGCCAAAGTCCAGTGCTCTCCTGGTCATTACTACAACACCACTGTGCACCGCTGCATCCGCTGCCCCCTGGGGACCTACCAGCCCGACTTCCGCCAGAACTACTGCATCTCCTGCCCTGGCAACACCACCACCGACTTCGACGGAGCCACCACCGTCTCCCAGTGCAAGAacCGGGAGTGTGGGGGCGAGCTGGGAGAGTACACGGGCTACATCGAGTCACCCAACTACCCAGGCAACTACCCTGCCAATGTGGAGTGCACCTGGAACATCAACCCCCCACCCAAACGCAAGATCCTCATCGTGGTGCCTGAGATCTTCCTGCCCTCCGAGGACGAGTGCGGAGACGTGCTGGTCATGAGGAAGAACTCCTCGCCCACCTCCATCACCACCTATGAGACCTGTCAGACATATGAGAGGCCCATCGCCTTCACCGCCCGCTCCCGCCGCCTCTGGATCAACTTCAAATCCAACGAGGCCAACAGCGCCCGTGGCTTCCAGATCCCCTACGTCACCTACGACGAGGACTATGAGCAGCTTGTGGAGGACATCGTGAGAGACGGCAGGCTGTACGCCTCTGAAAACCACCAGGAAATCCTGAAGGATAAGAAGCTGATTAAGACCTTGTTTGATGTGCTGGCTCACCCAAACAACTACTTCAAGTACACCACCCGGGAGTCCAACGAGATGCTGCCGCGATCCTTCATCCGACTGCTCAGCAGCAAAGTGTCCGCCTTCCTCCGACCATACAAGTAGCCCCGGGGCCGGGGAGCCAGCCACACAACCcgcaacagcaacaaaacaacaaagaaactttattttttaatggcttttaaaaCATACTTCACTATGcagactttcattttttttgcctttttttgttctccttcCTACCAATGGAATTCACTTGTTAAACCAGCTCCAGCCCTTTCATTGAGAATCTGGGCTTTATTGACTTTCCCCCCTTTGTTTGAATATTTATCGCCACttcttgttgtgtttgtttgtttgttgtttctttttaagtcCCATGAAAGACCTCTGCAGAACCTTGCGTTTTAGCTGCAGCCATCGCTGTCGCCGCTGTCGCCGCTATTTCCTCCGAGGGTGACAGACACTCCTTATTCAAACAATGAGGAACCGTTACGTACTTAAAATGAGTTGCCACCGTTCATCGGACGTGTGAACGTGGTTAAGTGCTTTCTTGTTGGACACTTATGTAGTGTACTCTTCCTAAAACGGGATTTGAGCTCTGCGATTTCCCTTATTGTTCTGTACATCTTACCGCATTCAGAGCATTACTATATTCAGGCTCTTAGAGCAATGCTTCTTAAGGTCTTGCTGTTAAAACAGTTTGATTTCTTATCTGTTCTATGTCTGTTTATGTTTGGATTGTATTATTCTGTTGCTTCGTTTTAGACCATTTTTATATTCACAGTTAAGTAACCTATCTAAGCCGAAATATCCTTTCTGTCAGCACAAATGTAATGCTTCCAAAAGCCAATACACACAGATGTAGGAAAGCTAGGGAAACTACAGTCAGTGTGGTTGAAATGCTCCACATTGAAACAGTCCCTTACAGAGACTGGAGAAAAGTATGGTTCTGGGACAGTTAGCAGCGGCTCGCTCTGGCAGACACTTTAAAAACCTGTCCGGATCCCGAATTGCGTGTTTTTGAGAATGAGAAGGTGCTACATTTGTGGATTCAAAGAGATTTTGTTGAGAGGGAATTCAAAAAGGAAAACGGTGATCGACGGAGTGGTGTGAAAAACAGCAATTAACAGGAGATTAAAGCAGTAAGTTATTAGATTCGGTGACCTCTTAGGCCTCAAACTTAAGTCATGCCTGTAACCCTGAGATCtccagaataaaatatatgaacGTTTCCGTTCCCCCCGATGAGGGAATCTCTTCGCTGTAATTAACAAAGTGACTAAGACGACGGTTGAGCCCACATTCAGGCGGCCCATCCCAGATTAATAACCCCCATCCAAAGAAAAGGAGCCCACCCACCTCTGGCTCCCTCTGTCCCCTCGAAACCAGCTCTGCCAAAGACTGCCTCCGTGGCACgatcatgattttattatttgtgcactAGATATAGACCCGTCATTCTACCTTTATTGTAAAAGTGCAATGAATTTAGTCtcctttttgttgttcttctctTGACAGAAAAGCAGTAACAATATTTATACCTGCCAAAACTGTACAATGGAAtgtctctttgttttttcttttttaaagaatatattcTAAGGTTAACTTAAAAATACAGCGACTGGCATCTgggttgtatttaaaaaaaaaaacaactgaaaagtaGATTTAAACTTTTAACTTATGTCCCTTACAAATAAAACcctacatattttaaacacttaaatagctacatatatatatacacttgtaTATAACAAATCATTAtaccaccttttttttttttgctgcattttcttccttgttttttttgtcatatatttgtgtgtgccCATACACTGGTGGTCAAAATTATAGGGTCACCTGGAAACCTGGATGATTTCCTAATTAGAAgggaaaactacattttaactATTAGCTTGTGCGAAAGTGTAATTCATAAAATAGAACTCTCAATATATTGAACTGGCATTTAACCCGACTATTGTGCTCAATAAGGACTGCATTGTAAATCCACAGGAGATGCAACACAATGGCTCTGTATCCACAGCTCACTAAGCGCAATAAGTGTGCGATACAGTAAAGGGACAAACTGACTTTTTGGGAACTTTTCAGTTCGTATGACACTAAACGTGattctgatttgttttcttgtaaaatcTCTCCCTATTAAAGAAAATAGTAATGAATCTTGGAGAAGATGATATGATGGTTGCCAGTGTGCAGCTCAAAAGCCTGTGTTGAGATGAGAGGAACATGCCTGGAGTGAGAACTCCACTAGAAGGTTGGCCAAAAAAGCCTTTAATAATAGTATCAAACCTTCAGGTCCAACAGGAAAGAGCATGTGAGAAGAAAACCGGGCCAGAGGCCACCAGTATATTTGCATTGTGCCCCCTGTAAGACTTTGAGATAGTGTTGTAAAGTTTGAGCATGGGTTTGCTGGTCCTCAAATAGGAGATGTTGTAAATGCACAATATTATTCCATTGTAAGATGATCCTGCAGTACCTTCAGAGAGGAGATTTGCGGTGAAAGCATTTGATTTTCAGCATGATAACTACACcctaaatctaaatctatattagaagaaagaagaaaagcagGTGTTGTAATGAATGCACTAGTCTCTGACTTTAGTAATGATCAAACACAGTGAGAAGTGTGCATTCCGATGCCAGCGAAGCATTATCTctgattaattttgttttgagaaaCTTAATCCATCATTATGATATCCAAGTGTCTCCTTAATATTGAACAccagtacatatatatatgcatatgtatatgcatGCTGTGTAAATTTATTAGAACATCTCATTTTGTCTGCATATATAATTTGCTGTGCTTGTTAAAACAAACCACTATAACTGAAACTCGCATCAAAACGGCCAAATTCATGAATTTAATACAACATGCAGATAGTTTAAAATACTTCATATGGTAAAATGCACGGGATTACTCACAAAACAGATGGAATCCGTTACAATTCTACATTTCGACAAGATAAGGATTTCAACAACACTTCCACGAAATGCTGAAGTCCATGGTTTAGTTTTGAATTAGTTTCACATATGATGAATTTATATAACtttacaattaatgtatttgatgaAAAGTAGTTAGTGTTCTAATAAATGTGCACATTACTGTATACAAACCTACCTTATATCTAAAATAATCTGGTACctgcttggttttgtttttaataaagtacaattttgtgtatatttgcaCAGGTGTAGCAATAATTGCTGAAACACTTGGTCCAGTTGCAGCCCAGTCAAACACTCCTGattagatttgcattttttgaaAAGGCTCTTGGAACAGTATACCCAGACTGCCATCGATCGCTGTGTCTTCATGAATGTTCAGAAACAAGCCAAGCTACAATGAGagttttcttatgtttcttctatttatatatatttgtttttttttcctgcgcATTACTGTTCAACAGCCCCCTCCCCGCCCCAGCCCATCaacctgaacacacacagtcacattattgccttttttgttttttaaatatgagtTTGCTATGATGTATCATAGAGTTGATAATGGTATTTGCACTTGAAAATTGTTATTGctcatgtaaaaacaaatgtctggattttgtattgtcttttttaatgaatggaATTGGTGTTCTTATGTTTGTAAGAGCTTCTGCTTCTTTCTTTACCAGCCCCTGAGACAGATTGGTGGGGGGGACGGGACATTTTACTTTCTATTAGGTTTACTTTccacatgtgtttgttttgctaaatCATACACAAGTTTTTTAAGTTGCACAGTAGTCTTACTGTAAGCCACAGCAgtctaatacacacacacacacacgcacgcacgcacgcacgcacgcaagCAAGCTCTATgttaatgaaaagaaagcaaataatTTGATCAATTAAGACCAGCTTAAGAAACACTGATCACTCAGAAGtcactgctttaaaatacacTATAGAAAGCACTATGGCTACACTAGTCATCCGCACAGTCATAATCATAATGTTGCAGGATTCAAATATACAACCaaggaaaagaaatgcattagaCCGTTTTTTTGattacatcattaaaatgtaatgtacccCCACCAGTGTTTGAATGCTTCCTCTTGTGATCAGGAAACGTCAGGGGTGGAAGAGGAGACAATTGATACAAGTGTTCCAAAGGGTGggacacataaataaaccacacTGGAAGAGGTGAC

Function

GO: NA

KEGG:

id description
K24468 SCUBE1_3; signal peptide, CUB and EGF-like domain-containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58277 lncRNA upstream 101047 42703656 ~ 42792219 (+) True G46739
TU58257 lncRNA upstream 197643 42693662 ~ 42695623 (+) True G46734
TU58253 lncRNA upstream 200720 42692206 ~ 42692546 (+) True G46730
TU58243 lncRNA upstream 238274 42650190 ~ 42654992 (+) False AMCG00013777
TU58217 lncRNA upstream 393667 42495746 ~ 42499599 (+) True G46701
TU58345 lncRNA downstream 41469 42977612 ~ 42980239 (+) True G46798
TU58364 lncRNA downstream 62596 42998739 ~ 42999135 (+) True G46814
TU58418 lncRNA downstream 150247 43086390 ~ 43086600 (+) True G46861
TU58474 lncRNA downstream 414710 43350853 ~ 43352415 (+) True G46905
TU58521 lncRNA downstream 496233 43432376 ~ 43452015 (+) False G46940
AMCG00013785 mRNA upstream 26357 42842575 ~ 42866909 (+) True AMCG00013785
AMCG00013783 mRNA upstream 79123 42785427 ~ 42814143 (+) True AMCG00013783
AMCG00013782 mRNA upstream 155045 42733545 ~ 42738221 (+) True AMCG00013782
AMCG00013780 mRNA upstream 169323 42718693 ~ 42723943 (+) True AMCG00013780
AMCG00013776 mRNA upstream 204063 42665282 ~ 42689203 (+) True AMCG00013776
AMCG00013787 mRNA downstream 858 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013791 mRNA downstream 129193 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013799 mRNA downstream 167991 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013803 mRNA downstream 342988 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013807 mRNA downstream 489812 43425955 ~ 43431338 (+) True AMCG00013807
TU58242 other upstream 244512 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 452021 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 452021 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 452021 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2520106 40350652 ~ 40373160 (+) False G46345
TU58393 other downstream 103841 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 151146 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 502349 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2098629 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2390515 45326658 ~ 45360882 (+) True G47206

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045121 True 1424 lncRNA 0.33 2 NC_007134.7 41303512 ~ 41305045 (-)
grasscarp (Ctenopharyngodon idella) CI01000192_00124135_00167418.mRNA True 3486 mRNA 0.51 19 CI01000192 123577 ~ 167829 (-)