RNA id: AMCG00013787


Basic Information

Item Value
RNA id AMCG00013787
length 1764
RNA type mRNA
GC content 0.64
exon number 10
gene id AMCG00013787
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42937001 ~ 42946339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGCTCGCACCCCCTGCACTCCGACCGGGCGCAAGACGTGGCCACCGCGTCCAGCTTCCGCCAGTTCCGCCTCACGCACTTCCACCTGGACCTGGAGGTGGACTTCGAGCGGCGGCAGGTGCGGGGCGCCGAGCGGCTGCGGCTGCGGTGTGTGCGGGGAGGCCGGGCCGAGCTGCGCCTGGACGTGCACCCGTCGCTGGCGGTACGGGAGGTGCGCTGCAGCCCGGGCCCGGACAGCGCCGGGGGGACGGTGGACTTCCAGACCCGGGACTTCACCCGCTACGGGAGCACGCTGGTGCTGACATTCCCGGTGCCGTGGAAGAGCGACGACGAGTTCAGTGTGTCCATCCAGTACACTGCGAGCGACGGGCCCGGGCTGTGCTGGCTGGAGCCCGAGCAGACGTCCGGGAAGCTCAAGCCCTTTGTCTTCACGCAAGGCCAGGCGGTGCTCAACAGGTCCCTCTTTCCCTGCTTTGATACCCCGGCGGTGAAGAGCACGTACTCTGCCTCTGTCAAGGTGCCCGAGGGCTTCACTGCGGTGATGAGCGCCACCACCTGGGAGCACAGAAAGGCAGACAACACCTTCCTGTTCTCCATGGAGCAGCCCATCCCCTCCTACCTGGTGGCCCTGGCCGTGGGGGACCTGGTGTCCGCAAAAGTGGGGCCCAGGTCTCATGTGTGGACAGAGCCCTGTCTGCTGCAGGCGGCCCAGAAGGAGTACGACGGCATCATCGAGGACTTCCTGGCCACCGGAGAGAAGCTGTTTGGGCCCTATGTGTGGGGGAGGTACGACGTGCTGTTCATGCCACCCTCCTTCCCCTTTGGGGGCATGGAGAACCCGTGCCTCACCTTCGTCACGCCCTGCCTGCTGGCCGGGGACCGTTCGCTGGCCGACGTCATCGTGCACGAGATCTGCCACAGCTGGTTCGGCAACCTCGTCACCAACGCCAACTGGGGCGACTTCTGGCTGAACGAGGGCTTCACGATGTACGCCCAGCGGCGCGTCTGCACCGAGATCTACGGGAAAGCCTATGCCAGTCTGGAGGCGGCCACCGGCAGGGCCCTGCTCCGCCAGCACATGGACAACACAGGGGAGGACCACCCGCTCAACAAGCTGCGGGTCAAGATTGAGCCAGGTGTGGACCCTGACGACACCTACAACGAGACCCCCTATGAGAAGGGCTTCTGTTTCGTGTCCTACCTGGCTCACCTGGCTGGAGACCAGAGTCGCTTTGACGCCTTTCTCAGGGTCAGGCTGGAGTTTGAGAGCTGGCTGAATGTCCCTGGCTGGCCACCATATCTGCCTGACCTGTCAGCGGGGCAGAGTCTGATGGGGCCAGGGGAGGAGTTGGCGACTCTGTGGGCAGCAGACAGCCTGGACATGCCAGCTGTAAAGAACACCGACACTCAGAGCTGGAGGACCTACCAGACCATTTACTTCCTGGACAAGATCCTGGAGAAGTCCCCTCTGCCCCCAGGTCGTATCGAGAAGTTTGCGACGCAGTACCCACAGGTGGTGAAGACCCAAAACGCTGAGCTGCGTCTGCGCTGGGCCCAGATCGTTCTGAAGAACCAGCACCAGCCTGGGTACCAGCATGTCAGGGACTTCCTCAGCTGCCAGAAGTACACCCTGCCTGTGTACCGGGCCATGTGGAGCGGCTCGGAGGAGACCAGAGCGCTGGCCGCCGAGATCTTCAGTGCCACCGCCCAGCAGCTGCACTGCAATGTCCGCAAATACGTGCAGCAGATCCTGAGCTGA

Function

GO:

id name namespace
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01260 RNPEP; aminopeptidase B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58277 lncRNA upstream 144782 42703656 ~ 42792219 (+) True G46739
TU58257 lncRNA upstream 241378 42693662 ~ 42695623 (+) True G46734
TU58253 lncRNA upstream 244455 42692206 ~ 42692546 (+) True G46730
TU58243 lncRNA upstream 282009 42650190 ~ 42654992 (+) False AMCG00013777
TU58217 lncRNA upstream 437402 42495746 ~ 42499599 (+) True G46701
TU58345 lncRNA downstream 31273 42977612 ~ 42980239 (+) True G46798
TU58364 lncRNA downstream 52400 42998739 ~ 42999135 (+) True G46814
TU58418 lncRNA downstream 140051 43086390 ~ 43086600 (+) True G46861
TU58474 lncRNA downstream 404514 43350853 ~ 43352415 (+) True G46905
TU58521 lncRNA downstream 486037 43432376 ~ 43452015 (+) False G46940
AMCG00013786 mRNA upstream 858 42893266 ~ 42936143 (+) True AMCG00013786
AMCG00013785 mRNA upstream 70092 42842575 ~ 42866909 (+) True AMCG00013785
AMCG00013783 mRNA upstream 122858 42785427 ~ 42814143 (+) True AMCG00013783
AMCG00013782 mRNA upstream 198780 42733545 ~ 42738221 (+) True AMCG00013782
AMCG00013780 mRNA upstream 213058 42718693 ~ 42723943 (+) True AMCG00013780
AMCG00013791 mRNA downstream 118997 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013799 mRNA downstream 157795 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013803 mRNA downstream 332792 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013807 mRNA downstream 479616 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013811 mRNA downstream 524118 43470457 ~ 43487228 (+) True AMCG00013811
TU58242 other upstream 288247 42644987 ~ 42648754 (+) True G46723
TU58194 other upstream 495756 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other upstream 495756 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other upstream 495756 42428101 ~ 42441245 (+) False AMCG00013770
TU57778 other upstream 2563841 40350652 ~ 40373160 (+) False G46345
TU58393 other downstream 93645 43039984 ~ 43044436 (+) True G46840
TU58419 other downstream 140950 43087289 ~ 43089643 (+) True G46862
TU58527 other downstream 492153 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 2088433 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 2380319 45326658 ~ 45360882 (+) True G47206

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02654091_02663519.mRNA True 2146 mRNA 0.47 13 CI01000306 2654091 ~ 2663694 (+)