RNA id: AMCG00013807


Basic Information

Item Value
RNA id AMCG00013807
length 2674
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00013807
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43425955 ~ 43431338 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGATTTTAATTGGGAAAGTAACAGTGGGACTAAAAGGCCAAGCCCGTCAACAAGACAGAAAATACGCTTTATGATAGGAACCCCTGACGTCACTTAGCTCTGTCCCAAAATGGGCTGTTTGCGCTCAAAAGGGTGTCACCCATCTTCTCCTATTAGTGATAGGAGCCGAGGAGCGCACAGCTGGGACTCACTGAGCATCCCACACAGGAGAGGTACAGGAGGCTAAGGACACAGTTTGGGATCTGGAGACATCAAAAACATCACTGATTGGAGACGAAGAGGCAGATTCCCTCAGTGATTTCCTAGGTCTCTAATAAGGAGCTGATCTGGACTTAATGCCAAAAGCTGCAGCATGGAGCTGAAGGTGTGGGTTGAAAGTGTCCAGAGGGTGATCTGTGGGGTATCTGAGAAAACCACCTGCCAGGAAGTGGTCATCGCACTGGCACAGGCTATGGGTCGCCCAGGCCGGTATACTTTGAAAGAAAAGTTCAAGGAGTTCGAGCGCAACGTCTCCCCCGACGAGAAGCTCTTGGAGTCCTTGAATAAATACGGGCAGCAGGCCAGCGAGGTGCAGCTCATTCTGAACCACAACGGGCCATCTCTAGCCGGGCCGAGGTCATGTGCTCAGCTGCGGGGGCCACGGGGTGCTGACCAGAGTGCACACCGGCAGAGCCTGCCTCCTCTCGTCCGGCTCCGCATCAAGACGGACCTCCAGTCCGACAACAAGAAACCGAAACGCAAGTCGCTTACATTTGCCGAGGAGGCTAGGGAATGGATTGAGTCCTTCAGCAGGACAAGGCTGCACAGGGTCAGGGGCAAGAACAAAGACAACAGGAAGAGGGACTCCACTCTGAGCCAGCATGAAGAAATACAGGAGCCCATCCTCCTCTTCCAGAAGACCCCTGACCAGTCAGTGAGAACAGCAGAGCCAATCTCGGGACAAGATGCAGAGGAGAAACAGATGGAAGAGCTCCACAGACTACTCAGCCAGCAACAAACCCAGCTCATGGCCCTCCAGTCCCAGTTGGACACAACAGAGGCACAGATCGAGGCCTTGGAGGAGCAAGAGCAGCTGAGACAGGAGGCAGAACAGCTTGAAGTGCTCATTGCATCACAGCAGGCCGAGGCGGAGGAGCTGGAGTTCTGGGAGAATGAGCTGAGAGCAGAGGAAGGCTACGAGACAGACCTGCAGGAGCAATTCCTGGAGATGAAGCAGAAAGCGTCGGAGTGTAAGGGGAAGCTGGAGGAGTACAAGAAGCGACTCCAAGGCCTGGACATAGCCAGAGATTCCCAAGCCCACCTGGACTACGAGCTGTCTGAAGAGTTGGCCCTGAGCAGGATGGAGACGAGCCAGCTAGAGGCCAACCTTGCCATGTCCAAGGAATCCCTGCGAGAGGCCAACCAGGAACTGCAGGTCGGTCCACCCCCCTGGGGGAAGATTCTTTCCGATACACCGAAAAGCTTGCCTTTCCCGTATCGGTTCAGTGACACGAGTTGCGGCCCAGGGCAGCTGAGGGAGTGGTTGACTCGGTGGTCCAAAGCCCAGGCTTCAGGGGTGCCCAACCCTGAAGAAGATAAACAATGGGGTAGCACCAGGGTGTAGAAGAGGGACAACTCTACTGACCGCAACAGAGAAATTACAGACTCCATCCTTCTCTTACAGAAGAAACACGGAGAGCTTGACGTCTTGACCGTGGGACTCCTGCACACCAACTCGAAGCACTTCATCTCAGACTCTGGGCCTTGCAGCTCTGCCTTTCTGTGTCACAAATCTTTAGCACACCTTTAGCACTGGCTTATGAGAGGCATTTGCAAAGATCCAGATAGACAGTGAAAGCGAGGGGCGTTGGAGGATTGTTTGTTACCCCCGAATTATCCAGGAACACCActgtaaaaggaaaaatagGGGAGGCCCACCTTTTAATTGGTCAAATTAAGATTGCATTGGGTATTGATCCTATCCAAGATAAACTGATCGCATGAAATTCTTTTACAGATCAAACACTAAGTCTACCACGTGGATCCAAAACAAATCCACCTCTTGCCCGAGAAGGTCTGTTCATATTATCTCCTAAGAGAAATGAGTCAACTTCCAGACAATTGATGGGGACCTGAACGCACATTACATTTACACCGCACTGGTTGACTTTGGGGAACTAAACAACTGTTGTATCTTGTCCATAAAATGGTCAATCCTGGTTTTTAGTAATTATTAAAGACAAGACTTTTTCATAACCAAACATCCACTAATGTTTATTCCAGAACCAACAAGAGACTTTAAACCCAGAGGCAGTTGGCAGTAAGCACAATTCACCCTGGTTTATGTGCTTCTGCAAAAACACTGGATCAAGCATCTGTAACGGGAGACTGGAGCATACCTTTCCAGTAACTTGAGATTTACAAAGCAGTACCTACACTCTTACAGTTTGCCTGTGAAGTGATTGCTTTTGCAAGCTGATGGGTTATGtatgctattaaaataaaaaacctgatTGAGGTGTTTAGCATTTCTGCTGCACAGATCATGTTCATTCCATTGGACACCAGTTCATGTTCAATGGTTTTTGCATACTGTATTAATGGTTCAATTTAAATATCTCctcaattataaaaatattttagaacacccttattgttttcatgcacaatttgatatacatactgtaccatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58474 lncRNA upstream 73540 43350853 ~ 43352415 (+) True G46905
TU58418 lncRNA upstream 339355 43086390 ~ 43086600 (+) True G46861
TU58364 lncRNA upstream 426820 42998739 ~ 42999135 (+) True G46814
TU58345 lncRNA upstream 445716 42977612 ~ 42980239 (+) True G46798
TU58277 lncRNA upstream 633736 42703656 ~ 42792219 (+) True G46739
TU58521 lncRNA downstream 1038 43432376 ~ 43452015 (+) False G46940
TU58523 lncRNA downstream 10159 43441497 ~ 43443296 (+) True G46941
TU58520 lncRNA downstream 13620 43444958 ~ 43452015 (+) True G46940
TU58532 lncRNA downstream 31433 43462771 ~ 43464006 (+) True G46949
TU58645 lncRNA downstream 269586 43700924 ~ 43712011 (+) False G47032
AMCG00013803 mRNA upstream 143951 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013799 mRNA upstream 317319 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013791 mRNA upstream 356034 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013787 mRNA upstream 479616 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013786 mRNA upstream 489812 42893266 ~ 42936143 (+) True AMCG00013786
AMCG00013811 mRNA downstream 39119 43470457 ~ 43487228 (+) True AMCG00013811
AMCG00013812 mRNA downstream 59448 43490786 ~ 43514457 (+) True AMCG00013812
AMCG00013815 mRNA downstream 163103 43594441 ~ 43607562 (+) True AMCG00013815
AMCG00013817 mRNA downstream 186713 43618051 ~ 43620709 (+) True AMCG00013817
AMCG00013821 mRNA downstream 199130 43630468 ~ 43631598 (+) True AMCG00013821
TU58419 other upstream 336312 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 381519 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 777201 42644987 ~ 42648754 (+) True G46723
TU58195 other upstream 984710 42428101 ~ 42441245 (+) False AMCG00013770
TU58527 other downstream 7154 43438492 ~ 43440698 (+) True G46945
TU58815 other downstream 1603434 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1895320 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2385034 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2503321 45934659 ~ 45941906 (+) True G47398

Expression Profile