RNA id: AMCG00013811


Basic Information

Item Value
RNA id AMCG00013811
length 3740
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00013811
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43470457 ~ 43487228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaaatatacacaggGACTGTCCAGCTCAGTGTGGGCACTCTCCCATCCCCTCTCCCCCTGCGATGAGCTCGTGGGGAGGAGTGTtcagggagaagagagagacactcAGAGCCCACAGCCTCAGTGACTGACTGCACACAGTGATTAGCAGGGAGAGTGGCCCACAGTGGGAGTCTTTGGCAGTGGGGATACAGAGGAGCACAGTGCAGACGGAGGGAGTGCACACAGAGGGGAGAACAGCGatcCAGTGGCCAATCCGCTGCCTGAATGAGAGAGTGGGCGGAGCCAGATCTCAGCATGGCTGCCAACAGCTACATGGCAGTGTCTGATGGGTATAGTGTGTCAGAGCCGCTGCAGTATTACGACGTGCTGTCGGACCCTCTGAGCTATTCACTGCAGGAGACAGACCTTCACATCCCTTCCTACAGCCAGTACCCAGGCATGCAATTCTCTCCTGTCCTGCCGGGGGCGCCCTCTCCCCAGGCCTGTTACCCGCCCTACCCCTACAGCTCGCAGTGCCCAGAGGGACCGTATCCAGCAGGGGGCTGTGAGCTTGGGCGATCCCCCTGCATGGTGCCCTTGGAAATGGACGCCAGCCTGCCTGGCCTCCCTGGCCTTCCAGGGCTGCCCCTGCTGAAAAGGACACGGATGGGCCCTGGCAGCCTGCGTCTGCGTGGGATGGACGagctgtgtgtggtgtgtggagACAAGGCCTCGGGGTATCACTACAATGCTCTCACTTGTGAGGGTTGTAAAGGTTTCTTCCGGCGCAGTATCACAAAGCAAGCTGTGTACAAGTGCAAGAGCGGGGGCGGATGCGAGATGGACATGTACATGCGCAGAAAGTGTCAGGAGTGCCGTTTGAAGAAGTGCCGAGCGGTGGGCATGCTGGCAGAGTGTCTGCTGACTGAGGTACAGTGCCAGTCTAAGAGGCTGCGGAAGAGTGCCAAGCAGGGGGTGGAGTTGCGCTGCACCATCAAGCAGGAAGAGGATGAGGGCCCAGAAAGCCAGAGAGAGGTGTCCTCCACCAGCAGACTGTCCACCCAGGCTGGCACAGGGCTGACCCCCGAGGAGCAGCACTTGTTAGATGGAATTGTTAATGCTCATCGTCGGTACAAGACACAGCAGGAGACACTGCAAGGCAGAGCCTTTGAGATGCCAGCCCCAGAAGAGAGCTTTGACCGGCTGGCAGGTCTGGGTTCGCCACAGTACCAGAGCTTCCTCGAGTTCTCCCAAAGTCTCCCTGGCTTCAAGCTCCTGGACTGTGATGACCAGACCGCCCTGCTCAAGGGCTCTGCGGTGGAGGTTATGTTTCTTCACTCAGCCCAGCACTTTAACCAGGGCCCCCAGGGGGACACAGCAGATCCTCTAATCTGGCCACTGTCGGCTGTGTACCCCCCCACTGCAGACCACAGCCCCCTCTACTGGGTACGGCCCCTGGACTCTAATGAGGGGGCCAGAGCAGCACCCCCTGGGACACCAGTAGTGGCAGAAGGTCTGCTAGACCCCGTCATGAGCTTTTTCCGCAGTATGGCCATGATAGGGGTAATGGAGTCCGAATATGCTCTTCTCACTGCCACAGCGGTGCTTTGCTCAGATCGGCCCATGTTGCATGCCCGAGCCAAGGTTGAAAGCCTGCAGGAGCCAGTGCTGGAGCTGTTGGGCCGGGTGAGTGGGCTCTGCCACCCTGAGGACCCCCGGCATTTTGCCAGGCTGCTCGGGCGCCTGACAGAACTGCGCACACTCCAGCACAACCACCTCCGCCTCCTGTGTCAACACCCCTGGGCACCACAAGACTGGCACCTGCACTGAGACAGGAGAGACAGGACTGATGGGGGGGAGGGCAAGTGGCTGGGTAAGGGGAAGGGGAATGGACAGGCTGAGGGAGACTGAGGGAGTGAGGAAACAGGAATGTAAAAGGGTGGAAAGAGAGGACAGAGGCTGGGGAACGCAGAGAGGTTGTTAACACTCAGGGAGGAAAGTAAGAAGGCACCCATGACTAAATGGCAAGCTTACAATGGGCTGGGAATTGATTTAGAAGGACAATTGAATTCTGTGAAAGCTACAAGCAGTGGAGGGAGGAAACAGCCAGCATCCACAAGGACCTCATCTTCTCCTGGGGAGATCCACATCCCGATGAGCGTCACACAGATTGCTGAGACTCACTCATCTGCAGACAAAAACAGTGCAAGTGTGCTTGTGCGTAGCTTTAGGTCTCAATAATCAACAACATGAAGATTTGAGTAGTGACATCTCAACTGGACACCTTTTAACCTGTCATTTGACCACCAGAGGTGTAGTAGATATATTTGGTGTCAACAAAGACAACATGCAAGAACTCTTGTGCCTGCTGATGCGTCTCAATGGTCAACAACTCAAGATTCGTTAGTTATTTCATTCCTTTCTACATGTAATATAGCTTATGTTGGGACAACTCATAATTATGTACATAGATAACCTCCCCATTCCctattctatattttattaatgtgggCTTTCTGGTGGGGCTGTTGTAGCTTTGTCTAAAGTCTACACTTCCCACAAAACCATCAACAAAGAGAACAAGtgacttttatttgttttttgttatccAGGGAATTAGCCTGTGTCTGTAGGGGCTGTGTTGTGAGGCAGTTGTCTCTCACACATaaactaaaattgagcttttaaattgtgtattaagGGGAATGTAGAGAAAATAATTCCTTTCATATGTGAGAAAGCCACAAAGCCCATCATACTCCTTTCTGAGCCTATGGATGAAATCCCAATCACAGTGCAAACATCATTAAAGTTTCTCATGGCTGCAGGTACAAATACGCCTATTGTGCTTTCAATTCCTATTTAAGTAAAAGATTTCCAAATACCTATTTGAAGTCCTGTGTGTATACTGCAGACATTTAATTTACCagttctgttattatttatatgttttcgGGTACTTTCACTCTTTCTTTATCATGTTGATTTTCTTCATATTCTCTTAGCGGGAGTTCCGATTGAGTGTGTAAACAAATACGCATTATAAACACAATGTATATCTGTGAAATATCCCAGAAGAGGATTTTGTGAATCAGTGGAGACATCAGCTGCACACAATGGTCAAAGTGTTTCTCATGGACAACTTAGGATATTAATGTGTAAGTTATTTAAACTGAGATACTAGAATACCAGACTATGTGGCAGTTGGAGCAACCTTTTTACCCTTGTGCCAAAAACAATTAATCGGAATTTGAAAATTTCCTTCCATCTGGGCGTCAAGTAAAACCATTATGTCATTGTTGTTCAACAATTCTGCATTAGGTAttatatttggttttattatttgttattattactgtatgGGTTGGAAACAATGACTGATAAATGATCTTGCATAGCAAAATGGGGAAgtgcaaatattttttatgcagaaatatcagaaatgtatttgattccTATGATAACAGGATATGTTTTCCATAATCTGGGgttatttcttttcattattggaaatatgcaaaacaataagACCTTCTCCTGATGCATTAACAGCACAAAAATGGAACCataatcaaacacacacaaaataatgatcttgtcacttttgtttcctttatctTGAAAAACTAGTTTTTCACAATGTTGTCCCCAAATGTGCATTACTACTTCAAGAACACTGAAGACCATTGACATAATCAGTTTGTATGTAATTAATGCTCTTACTCTACAACATATAATAAAAGCATTGAATCTTGT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58532 lncRNA upstream 6451 43462771 ~ 43464006 (+) True G46949
TU58521 lncRNA upstream 18442 43432376 ~ 43452015 (+) False G46940
TU58520 lncRNA upstream 18442 43444958 ~ 43452015 (+) True G46940
TU58523 lncRNA upstream 27161 43441497 ~ 43443296 (+) True G46941
TU58474 lncRNA upstream 118042 43350853 ~ 43352415 (+) True G46905
TU58645 lncRNA downstream 213696 43700924 ~ 43712011 (+) False G47032
TU58646 lncRNA downstream 213696 43700924 ~ 43704266 (+) True G47032
TU58655 lncRNA downstream 432441 43919669 ~ 43919967 (+) True G47040
TU58703 lncRNA downstream 735180 44222408 ~ 44223401 (+) True G47080
TU58732 lncRNA downstream 801829 44289057 ~ 44291796 (+) True G47106
AMCG00013807 mRNA upstream 39119 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013803 mRNA upstream 188453 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013799 mRNA upstream 361821 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013791 mRNA upstream 400536 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013787 mRNA upstream 524118 42937001 ~ 42946339 (+) True AMCG00013787
AMCG00013812 mRNA downstream 3558 43490786 ~ 43514457 (+) True AMCG00013812
AMCG00013815 mRNA downstream 107213 43594441 ~ 43607562 (+) True AMCG00013815
AMCG00013817 mRNA downstream 130823 43618051 ~ 43620709 (+) True AMCG00013817
AMCG00013821 mRNA downstream 143240 43630468 ~ 43631598 (+) True AMCG00013821
AMCG00013816 mRNA downstream 169999 43657227 ~ 43668484 (+) True AMCG00013816
TU58527 other upstream 29759 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 380814 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 426021 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 821703 42644987 ~ 42648754 (+) True G46723
TU58195 other upstream 1029212 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 1547544 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1839430 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2329144 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2447431 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 3582473 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile