RNA id: AMCG00013812



Basic Information


Item Value
RNA id AMCG00013812
length 1104
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00013812
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43490786 ~ 43514457 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GACACCAACTGTAGGAAATACTCCCACAGCCTCAGTAGAGGCTGTGTGAAGTCGGCTAACAGAAGAGTGACTGCGACTGAAGGTGGAAGTGTAGTTAAATGTTCATATCAGGATGGTTATCAGTCCTATGTGAAGTACTGGTGTTGTGATCCCTGTGGGAATAAGGATGTTCTCATTAAAACAGACACTGTTGTTACAGCAGGGAGATTCACCCTCACTAACAATGTCTCAGCGACTGTTAGGATGACCGGACTGACACTGCAGGATTCTGGGGAGTATTACTGTGGAGTGGAGAAATGGGGCTACGACATATTAGAAAAAATACACTTAGTAAAGcTCCCACAGTCTCCATTTTGTCCACCCCTGGACCTAAGAGTGACTGGGGCTGAAGGTGGACGTGTAGAGATTAAGTGTCCATATCAGGATGGTTATCAGTACCGTGTGAAGTACTGGTGTCGTGATTCCTGTGGGAATAAAGATGTTCTCATTAGAACTGGCAAGGCAGACACTGTTGTTACTGCAGGGAGATTCTACCTGATTAACTCTGTCTCAGCAAAGACCTTTACTGTGTGGATGAACAGACTGACACTGCAGGATTCTGGGGTCTATTACTGCGGAGTGGAGGATTGGGGCAAAGacacattaacaaaaatacactTGAGCGTCATTGAAGGTTGTGTGCAGTCAAGAAGAGTGACGGGGGTTGAAGGTGGACGTGTAGAGATTAACTGTACATATGAGGATGGTTATCAATACTATGTGAAGTATTGGTGTCGTGAACCCTGTGAGAATAAGGATGTTCTCATTAATTCTGTCCAGGCAGACATTACTGTTACAGCAGGGAGATTCACCCTCACTAACTATGTCTCAGCAATGATCTTTACTGTGTGGATGACCAGACTGACACTGCAGGATGCTGGAATCTATTACTGCGGAGTTGAGAAATGGGGCAAAGACATATATGGGGAAATACACTTGATCATCAGTAAAGcTCCCACAGTCTCCATTTTGTCCACCCCTGGACCTGTGACTGTAGAGACCACAGTTACTGTCACACCAACAACAGAGATCTCCACCCAGGCTGAATACATGAAAGAAGATCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58532 lncRNA upstream 26780 43462771 ~ 43464006 (+) True G46949
TU58521 lncRNA upstream 38771 43432376 ~ 43452015 (+) False G46940
TU58520 lncRNA upstream 38771 43444958 ~ 43452015 (+) True G46940
TU58523 lncRNA upstream 47490 43441497 ~ 43443296 (+) True G46941
TU58474 lncRNA upstream 138371 43350853 ~ 43352415 (+) True G46905
TU58645 lncRNA downstream 186467 43700924 ~ 43712011 (+) False G47032
TU58646 lncRNA downstream 186467 43700924 ~ 43704266 (+) True G47032
TU58655 lncRNA downstream 405212 43919669 ~ 43919967 (+) True G47040
TU58703 lncRNA downstream 707951 44222408 ~ 44223401 (+) True G47080
TU58732 lncRNA downstream 774600 44289057 ~ 44291796 (+) True G47106
AMCG00013811 mRNA upstream 3558 43470457 ~ 43487228 (+) True AMCG00013811
AMCG00013807 mRNA upstream 59448 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013803 mRNA upstream 208782 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013799 mRNA upstream 382150 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013791 mRNA upstream 420865 43065336 ~ 43069921 (+) True AMCG00013791
AMCG00013815 mRNA downstream 79984 43594441 ~ 43607562 (+) True AMCG00013815
AMCG00013817 mRNA downstream 103594 43618051 ~ 43620709 (+) True AMCG00013817
AMCG00013821 mRNA downstream 116011 43630468 ~ 43631598 (+) True AMCG00013821
AMCG00013816 mRNA downstream 142770 43657227 ~ 43668484 (+) True AMCG00013816
AMCG00013818 mRNA downstream 157776 43672233 ~ 43675241 (+) True AMCG00013818
TU58527 other upstream 50088 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 401143 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 446350 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 842032 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 1049541 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 1520315 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1812201 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2301915 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2420202 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 3555244 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile