RNA id: AMCG00013815


Basic Information

Item Value
RNA id AMCG00013815
length 2663
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00013815
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43594441 ~ 43607562 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAACCCCGCCGAAGACCGTAAACAGGGAGCCCAGACAGCAGACACATCAGAATCACAAGTCACATGCCACAGTCCAGGGACCCCTTCCCCTACCCGAGATTTGAAAATGATGACACTTTCCTCGGAGACAGCAAGAGATATCACATACCGCACGATTCAAAGCCCACCCATCTGGCGCAGAAGGACGACCCCTGGAATCGCCTGAACGCCGGAGCCAAGCAGTCCAGCAAAAAGCAAGAGGTCCTAAACAGGGACAAACCTACACCTCACCCCCCGACTGACAGAAAGACAAAGCAACTCTTAAAGCACATACATATCCGACTGTAGCTGTAATACACCAACCTATAGCTCCTGCACTAAGCCCGATGCACTTAACCATAAgatcctgggctgctcagcacacttattttgcacttcattaACCTGTTCCTTTATGCTCCTGCGCACTTGTGTATTTGCAGCACTTCTATTGTGTATGCCttcccctccctttagcacatatctAGGATTTAGCTGCTTATATCTGCACTTATTGGCTCATTTCACTAGTATGGTTACTGATTGTGTTACTTCacctttgtaatgctttatgCTTGTATAAACGTTTAATTGCCCTGAAatgttcaaaattaaataagttttaaaacagGGATTTTACACAAACATTCAAATGATGCCCACATTTAGGAGTGTTAATCCTGGAAGCTTATGCATTtacaaattgtaaacaaaatcaaacctaTTCCCCCTCCTTCTTAATGGACTTTATAGTCTGAGTTTGTTCACTGTACTTCTGACGTTTTTGTCAAGGCCCCTCAAGACAGCCTGGACTTTAGGATGAAGTCCACCTATAACCAACATGAAGACTTCCTGAAGAGCAAGAATGAGACCCTGTACCAAAGTGAAACCTTTAATGAGGACCATGGGAGGATTTTGACGAACCATGTGAAGGAAGACCCTCCACAGAACAACCCTGAGAAGATTCCATTCAGAATGTGTGTCAGCGGTGAGAGACTGTCCATTCACAGGATCAAGGGAACCATAGCAGGGGGCGGTGTGGGGTTACTCACAGCCCGCGTCCCGGCACCCTGGCAACCCGGCGAGGACCGTAAACAGCCCGGAGCCGCAGCAGCCTGCAGTCCCACAGCTGCGCTTCCCACGGGGTTCAACTGAACATCCTCGGCCATGCCTCGGTCCAGGGACCCCTTCCCCTCCCCGAGATATGAAAACGACGACACTTTCCTCGGAGACAGCAAGAGATGCCAGATATCGCGATATTCAAAGCCCACCCATCTGGCGCAGAACGACGACCCCTGGAGCCGCCTGAGCGCCGGAGCCACGCTGTCCAGCAGCAGGAGAGAGGTCCTGCACTTTGACCCCGAGGTACAGATACAGACCTACACCTCACCCCCGACTGACAGAAAGACAAAGCAACTCTGAACTGCTCCTGTTCCTGCTGGGTGTGAAGCACAGAAATATCAGACTGTCTGTGTAATACACCAGTGTAAAcccctgggctgctcagcacacTTGTATCGTTTGCACTTCTGTTACTGCAACTTCTCCTGTCTTCCCCTGCCTTCAGCATACCTAGGACACTGTATTGTGTGCACTTATTGGCTCATTTTACTAACTGTAACTGcacttggataaaggcatctggtcaggagaacaaaaagaaaaaaagtttaaaaacaaggaTTTTATACATCAATGCAATGGCTGCCCATGTTTACGGAGTTTGTCAATCCTGGAACTTTATGCATTTGCAAATTGTGAACTAACTCAATCCCTTGTTTCCCTCCTTAATGATGGACTTAATAGACAGTTTTGGTACATTTGCTATTTGTGTCAAGGCCCCTGAGGACAGCCTGGATTTTAATCTGAAGTCCACCTATAACCACCACCAGGAGTTCCTGAAGCCTAAGAATGAGACCCTGTACCAACGAGAAACCTTTACTGAGGACAATGGGAGGATTTTGAAGAACCGTGTGAAGGAAGACCCTCCACAGAACGACCTTCGGAAAAACCCCAACAGAGTGTGGGTCAGCGCTGAGAAAGCGTCCATTTACAGCATCGAGGGAACCATAGAGAGCCATCACAACGCATCAACTAACAGGGGCTACTCCAGGAAGCACGACGGAGGTTTCTACTCCACTTAAAAGCACAGAGGAGTCCCGGCAGTCCAAACGCCTCCTCACCCTGCTGGACCTTGGTCACAGACAGCACTGCGCTCACTCATCATGGTGCATGCCATGGGTGTTTGTTCCTCAACCTTTCTGCCGGATCCCGGACCCCGGGCCGGAGCCCCGAGTCTCCCCGGCTCTAGTATATCTGATCAATTCATCATGTCTGAACCACATGTCTGCGGCGGCCCTGCTGCGCGGAAGTGCCTCCTGCTCACCGCCGACTGCACGGCTCGCACTGCGGGTTTTATCACTTCAGAGTCGGAACCGGGCCGGCACTCCGACCTGATCAAATAAGATCACggtgtagatttttttttttcagtttgtttaaacactcacacaacacacatgcactctcGCACAAACACGCATCCATccacgcacacacgcactcacgCTTTCACTCTCCTTGCGCACCACGCCATGCACACGTCCTTTCGAATCTGGAACCTCCGACTGCGCAGGCGCCGTC

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58532 lncRNA upstream 130435 43462771 ~ 43464006 (+) True G46949
TU58521 lncRNA upstream 142426 43432376 ~ 43452015 (+) False G46940
TU58520 lncRNA upstream 142426 43444958 ~ 43452015 (+) True G46940
TU58523 lncRNA upstream 151145 43441497 ~ 43443296 (+) True G46941
TU58474 lncRNA upstream 242026 43350853 ~ 43352415 (+) True G46905
TU58645 lncRNA downstream 93362 43700924 ~ 43712011 (+) False G47032
TU58646 lncRNA downstream 93362 43700924 ~ 43704266 (+) True G47032
TU58655 lncRNA downstream 312107 43919669 ~ 43919967 (+) True G47040
TU58703 lncRNA downstream 614846 44222408 ~ 44223401 (+) True G47080
TU58732 lncRNA downstream 681495 44289057 ~ 44291796 (+) True G47106
AMCG00013812 mRNA upstream 79984 43490786 ~ 43514457 (+) True AMCG00013812
AMCG00013811 mRNA upstream 107213 43470457 ~ 43487228 (+) True AMCG00013811
AMCG00013807 mRNA upstream 163103 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013803 mRNA upstream 312437 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013799 mRNA upstream 485805 43104134 ~ 43108636 (+) True AMCG00013799
AMCG00013817 mRNA downstream 10489 43618051 ~ 43620709 (+) True AMCG00013817
AMCG00013821 mRNA downstream 22906 43630468 ~ 43631598 (+) True AMCG00013821
AMCG00013816 mRNA downstream 49665 43657227 ~ 43668484 (+) True AMCG00013816
AMCG00013818 mRNA downstream 64671 43672233 ~ 43675241 (+) True AMCG00013818
AMCG00013824 mRNA downstream 79790 43687352 ~ 43696325 (+) True AMCG00013824
TU58527 other upstream 153743 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 504798 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 550005 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 945687 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 1153196 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 1427210 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1719096 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2208810 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2327097 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 3462139 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile